spec/name-spotter_spec.rb in name-spotter-0.2.0 vs spec/name-spotter_spec.rb in name-spotter-0.2.1

@@ -80,11 +80,11 @@
   end
   
   it "should properly handle abbreviated names found by taxonfinder" do
     text = "Pardosa moesta Banks, 1892 is one spider, Schizocosa ocreata Keyserling, 1887 is a second and a third is Schizocosa saltatrix borealis. The abbreviations are P. moesta, S. ocreata, and S. saltatrix borealis is the third."
     tf_res = @tf.find(text)
-    tf_res.should == {:names=>[{:verbatim=>"Pardosa moesta", :scientificName=>"Pardosa moesta", :offsetStart=>0, :offsetEnd=>13}, {:verbatim=>"Schizocosa ocreata", :scientificName=>"Schizocosa ocreata", :offsetStart=>42, :offsetEnd=>59}, {:verbatim=>"Schizocosa saltatrix borealis.", :scientificName=>"Schizocosa saltatrix borealis", :offsetStart=>105, :offsetEnd=>134}, {:verbatim=>"P. moesta,", :scientificName=>"P[ardosa] moesta", :offsetStart=>158, :offsetEnd=>167}, {:verbatim=>"S. ocreata,", :scientificName=>"S[chizocosa] ocreata", :offsetStart=>169, :offsetEnd=>179}, {:verbatim=>"S. saltatrix borealis is", :scientificName=>"S[chizocosa] saltatrix borealis", :offsetStart=>185, :offsetEnd=>208}]}
+    tf_res.should == {:names=>[{:verbatim=>"Pardosa moesta", :scientificName=>"Pardosa moesta", :offsetStart=>0, :offsetEnd=>13}, {:verbatim=>"Schizocosa ocreata", :scientificName=>"Schizocosa ocreata", :offsetStart=>42, :offsetEnd=>59}, {:verbatim=>"Schizocosa saltatrix borealis", :scientificName=>"Schizocosa saltatrix borealis", :offsetStart=>105, :offsetEnd=>133}, {:verbatim=>"P. moesta", :scientificName=>"P[ardosa] moesta", :offsetStart=>158, :offsetEnd=>166}, {:verbatim=>"S. ocreata", :scientificName=>"S[chizocosa] ocreata", :offsetStart=>169, :offsetEnd=>178}, {:verbatim=>"S. saltatrix borealis", :scientificName=>"S[chizocosa] saltatrix borealis", :offsetStart=>185, :offsetEnd=>205}]}
   end
 
   it "should not make unsequential offsets on a page when using NetiNeti" do
     text = open(File.join(File.dirname(__FILE__), 'files', 'journalofentomol13pomo_0063.txt'), 'r:utf-8').read
     res = @neti.find(text)
@@ -109,9 +109,20 @@
   it "should not parse ridiculously long infraspecies names by taxon finder" do
     text = "If we encounter Plantago major it is ok, but if it is Plantago quercus quercus quercus quercus quercus quercus quercus quercus quercus quercus quercus quercus quercus quercus, something is probably not right. However we take Plantago quercus quercus quercus quercus quercus by some strange reason. Well, the reason is this kind of thing -- Pardosa moesta var. moesta f. moesta or something like that"
     res = @tf.find(text)
     res.should == {:names=>[{:verbatim=>"Plantago major", :scientificName=>"Plantago major", :offsetStart=>16, :offsetEnd=>29}, {:verbatim=>"Plantago quercus quercus quercus quercus quercus", :scientificName=>"Plantago quercus quercus quercus quercus quercus", :offsetStart=>225, :offsetEnd=>272}, {:verbatim=>"Pardosa moesta var. moesta f. moesta", :scientificName=>"Pardosa moesta var. moesta f. moesta", :offsetStart=>340, :offsetEnd=>375}]}
   end
+
+  it "should be able to recognize names like P.moesta by TaxonFinder" do
+    text = "Pardosa moesta! If we encounter Pardosa moesta and then P.modica another name I know is Xenopus laevis and also P.moesta. Again without space TaxonFinder should find both. And Plantago major foreva"
+    res = @tf.find(text)
+    res.should == {:names=>[{:verbatim=>"Pardosa moesta", :scientificName=>"Pardosa moesta", :offsetStart=>0, :offsetEnd=>13}, {:verbatim=>"Pardosa moesta", :scientificName=>"Pardosa moesta", :offsetStart=>32, :offsetEnd=>45}, {:verbatim=>"P.modica", :scientificName=>"P[ardosa] modica", :offsetStart=>56, :offsetEnd=>63}, {:verbatim=>"Xenopus laevis", :scientificName=>"Xenopus laevis", :offsetStart=>88, :offsetEnd=>101}, {:verbatim=>"P.moesta", :scientificName=>"P[ardosa] moesta", :offsetStart=>112, :offsetEnd=>119}, {:verbatim=>"Plantago major", :scientificName=>"Plantago major", :offsetStart=>176, :offsetEnd=>189}]}
+    res[:names].map do |name|
+      verbatim = name[:verbatim]
+      found_name = text[name[:offsetStart]..name[:offsetEnd]]
+      found_name.should == verbatim
+    end
+ end
   
   it "should register situations where new name started and prev name is finished in the same cycle in TF" do
     text = "What  happens another called Pardosa moesta (Araneae: Lycosidae) is the species?"
     res = @tf.find(text)
     res.should == {:names=>[{:verbatim=>"Pardosa moesta", :scientificName=>"Pardosa moesta", :offsetStart=>29, :offsetEnd=>42}, {:verbatim=>"(Araneae:", :scientificName=>"Araneae", :offsetStart=>44, :offsetEnd=>52}, {:verbatim=>"Lycosidae)", :scientificName=>"Lycosidae", :offsetStart=>54, :offsetEnd=>63}]}