transmem_spec.rb in mspire-0.3.9

- old
+ new

@@ -32,10 +32,11 @@
     @peps[5].prots = [@prots[4], @prots[8]]             # y
     @peps[6].prots = [@prots[8]]            # nil pep
     @peps[7].prots = [@prots[8], @prots[9]] # nil pep
 
     @validator = klass.new(@toppred_file)
+    @validator.false_to_total_ratio = 1.0
   end
 
   it_should_behave_like 'a validator'
 
   it 'gives correct precision with false ratio (across all option combinations)' do
@@ -78,10 +79,10 @@
   def calc_precision(norm, trans)
     prec = norm.to_f / (norm + trans)
   end
 
   it 'can calculate precision incrementally' do
-    val = klass.new(@toppred_file, :min_num_tms => 2)
+    val = klass.new(@toppred_file, :min_num_tms => 2, :false_to_total_ratio => 1.0)
     # usually we'd update the false_to_total_ratio, but not bothering for test
     # here we HAVE to set the status hash before hand... (we could redo this
     # section)
     val.transmem_status_hash = val.create_transmem_status_hash(@peps)
 