lib/ms/ident/protein.rb in mspire-0.6.2 vs lib/ms/ident/protein.rb in mspire-0.6.6

@@ -9,16 +9,16 @@
     # the protein sequence
     attr_accessor :sequence
     alias_method :seq, :sequence
     alias_method :seq=, :sequence=
 
-      # a description of the protein
-      attr_accessor :description
+    # a description of the protein
+    attr_accessor :description
 
     # if the GN=([^\s]+) regexp is found in the description, returns the first
     # match, or nil if not found
     def gene_id
-      description.andand.match(/ GN=(\w+) ?/)[1]
+      description.andand[/ GN=(\w+) ?/, 1]
     end
   end
 
   # a generic protein class that is ProteinLike
   class Protein