spec/ms/sequest/srf/pepxml_spec.rb in ms-sequest-0.1.2 vs spec/ms/sequest/srf/pepxml_spec.rb in ms-sequest-0.2.1
- old
+ new
@@ -1,19 +1,19 @@
require 'spec_helper'
require 'ms/sequest/srf/pepxml'
-describe 'an Ms::Ident::Pepxml object from an srf file with modifications' do
+describe 'an MS::Ident::Pepxml object from an srf file with modifications' do
before do
FileUtils.mkdir @out_path unless File.exist?(@out_path)
end
after do
FileUtils.rm_rf @out_path
end
@srf_file = SEQUEST_DIR + '/opd1_2runs_2mods/sequest331/020.srf'
@out_path = TESTFILES + '/tmp'
- @srf = Ms::Sequest::Srf.new(@srf_file)
+ @srf = MS::Sequest::Srf.new(@srf_file)
it 'produces xml with all the expected parts' do
tags = %w(msms_pipeline_analysis msms_run_summary sample_enzyme specificity search_summary search_database enzymatic_search_constraint aminoacid_modification parameter spectrum_query search_result search_hit modification_info mod_aminoacid_mass search_score)
pepxml = @srf.to_pepxml(:verbose => false)
xml_string = pepxml.to_xml