convert_visit.rb in metamri-0.2.24

- old
+ new
@@ -40,10 +40,12 @@
   v = VisitRawDataDirectory.new(raw_directory, scan_procedure_codename)
   puts "+++ Converting #{v.visit_directory} as part of #{v.scan_procedure_name} +++"
   output_directory = output_directory ||= v.default_preprocess_directory
 
   begin
-    default_options = {:ignore_patterns => [/vipr/,/ge_physios/,/raw$/,/pfiles/,/Processed-Images/,/900$/,/901$/,/999$/,/\/01300\./,/\/01301\./,/\/01001\./,/\/01002\./,/\/01000\./,/\/00600\./]}  # does not like "raw" because in dir path
+   ##  default_options = {:ignore_patterns => [/vipr/,/ge_physios/,/raw$/,/pfiles/,/Processed-Images/,/900$/,/901$/,/999$/,/\/01300\./,/\/01301\./,/\/01001\./,/\/01002\./,/\/01000\./,/\/00600\./]}  # does not like "raw" because in dir path
+   ## new flair has numbers in name and should not be skipped - removing
+    default_options = {:ignore_patterns => [/vipr/,/ge_physios/,/raw$/,/pfiles/,/Processed-Images/]}  # does not like "raw" because in dir path
     #options = default_options.merge(options)
     v.scan(default_options)
     v.to_nifti!(output_directory)
   rescue Exception => e
     puts "There was a problem scanning a dataset in #{v.visit_directory}... skipping."