bin/convert_visit.rb in metamri-0.1.5 vs bin/convert_visit.rb in metamri-0.1.6
- old
+ new
@@ -40,22 +40,22 @@
#
# == Example
#
#
def convert_visit(raw_directory, scan_procedure_codename, output_directory = nil)
- log = Logger.new(File.basename(raw_directory))
+ $LOG = Logger.new(File.join(Dir.tmpdir, File.basename(raw_directory)))
v = VisitRawDataDirectory.new(raw_directory, scan_procedure_codename)
puts "+++ Converting #{v.visit_directory} as part of #{v.scan_procedure_name} +++"
output_directory = output_directory ||= v.default_preprocess_directory
begin
v.scan
v.to_nifti!(output_directory)
rescue Exception => e
puts "There was a problem scanning a dataset in #{v.visit_directory}... skipping."
puts "Exception message: #{e.message}"
- log.error "There was a problem scanning a dataset in #{v.visit_directory}... skipping."
- log.error "Exception message: #{e.message}"
+ $LOG.error "There was a problem scanning a dataset in #{v.visit_directory}... skipping."
+ $LOG.error "Exception message: #{e.message}"
ensure
v = nil
end
end