test/scan_collection_test.rb in macroape-3.3.6 vs test/scan_collection_test.rb in macroape-3.3.7

@@ -1,6 +1,6 @@
-require 'test_helper'
+require_relative 'test_helper'
 
 class TestScanCollection < Test::Unit::TestCase
   def test_scan_pcm
     assert_equal File.read('test/data/KLF4_f2_scan_results_default_cutoff.txt').gsub("\r\n", "\n"),
                  Helpers.scan_collection_output('test/data/KLF4_f2.pcm test/data/test_collection.yaml --silent --pcm').gsub("\r\n","\n")
@@ -21,7 +21,16 @@
   def test_process_query_pwm_from_stdin
     assert_equal Helpers.scan_collection_output('test/data/KLF4_f2.pat test/data/test_collection.yaml --silent'),
                 Helpers.provide_stdin(File.read('test/data/KLF4_f2.pat')) {
                   Helpers.scan_collection_output('.stdin test/data/test_collection.yaml --silent')
                 }
+  end
+
+  def test_scan_medium_length_motif
+    assert_match /Query motif medium_motif_name gives 0 recognized words for a given P-value of 0\.0005 with the rough discretization level of 1. Forcing precise discretization level of 10/,
+                 Helpers.scan_collection_stderr('test/data/medium_motif.pat test/data/test_collection.yaml --precise --all --silent').gsub("\r\n", "\n")
+  end
+  def test_scan_short_length_motif
+    assert_match /Query motif short_motif_name gives 0 recognized words for a given P-value of 0\.0005 with the precise discretization level of 10\. It.s impossible to scan collection for this motif/,
+                 Helpers.scan_collection_stderr('test/data/short_motif.pat test/data/test_collection.yaml --precise --all --silent').gsub("\r\n", "\n")
   end
 end