spec/cli_spec.rb in lederhosen-1.4.0 vs spec/cli_spec.rb in lederhosen-1.6.0

@@ -10,11 +10,16 @@
   it 'should have a version command' do
     `./bin/lederhosen version`
     $?.success?.should be_true
   end
 
-  it 'should trim reads' do
+  it 'should trim paired QSEQ reads' do
     `./bin/lederhosen trim --reads-dir=spec/data/IL*.txt.gz --out-dir=#{$test_dir}/trimmed`
+    $?.success?.should be_true
+  end
+
+  it 'should trim paired, interleaved FASTQ reads' do
+    `./bin/lederhosen trim --reads-dir=spec/data/example.fastq --out-dir=#{$test_dir}/trimmed --read-type fastq`
     $?.success?.should be_true
   end
 
   it 'can create a usearch udb using usearch' do
     `./bin/lederhosen make_udb --input #{$test_dir}/trimmed/ILT_L_9_B_001.fasta --output #{$test_dir}/test_db.udb`