spec/cli_spec.rb in lederhosen-0.3.0 vs spec/cli_spec.rb in lederhosen-0.3.1
- old
+ new
@@ -35,10 +35,10 @@
`./bin/lederhosen cluster --identity=0.80 --input=#{$test_dir}/filtered.fasta --output=#{$test_dir}/clusters.uc`
$?.success?.should be_true
end
it 'should build OTU abundance matrices' do
- `./bin/lederhosen otu_table --clusters=#{$test_dir}/clusters.uc --output=#{$test_dir}/test_tables --joined=#{$test_dir}/joined.fasta`
+ `./bin/lederhosen otu_table --clusters=#{$test_dir}/clusters.uc --output=#{$test_dir}/test_tables`
$?.success?.should be_true
end
it 'should split joined.fasta into reads for each cluster' do
`./bin/lederhosen split --reads=#{$test_dir}/joined.fasta --clusters=#{$test_dir}/clusters.uc --out-dir=#{$test_dir}/split --min-clst-size=1`