lib/lederhosen/tasks/rep_reads.rb in lederhosen-0.2.9 vs lib/lederhosen/tasks/rep_reads.rb in lederhosen-0.2.10

- old
+ new

@@ -15,9 +15,10 @@ def rep_reads input = options[:clusters] output = options[:output] joined_reads = options[:joined] + ohai "getting represntative reads for #{input} w/ reads #{joined_reads} and saving to #{output}" # Load cluster table! clstr_info = Helpers.load_uc_file input clstr_counts = clstr_info[:clstr_counts] # clstr_counts[:clstr][sample.to_i] = reads seed_to_clstrnr = clstr_info[:seed_to_clstrnr]