rep_reads.rb in lederhosen-0.1.5

- old
+ new

@@ -4,11 +4,11 @@
 
 module Lederhosen
   class CLI
 
     desc "rep_reads",
-         "--clusters=clusters.uc --joined=joined.fasta --output=representative_reads.fasta"
+         "output a fasta file containing representative reads for each cluster given a UCLUST output file and the joined reads file"
 
     method_option :clusters, :type => :string, :required => true
     method_option :output,   :type => :string, :required => true
     method_option :joined,   :type => :string, :required => true
 
@@ -39,6 +39,6 @@
       
       out_handle.close
     end
 
   end
-end
\ No newline at end of file
+end