lib/genevalidator/arg_validation.rb in genevalidator-1.6.4 vs lib/genevalidator/arg_validation.rb in genevalidator-1.6.5

@@ -146,23 +146,30 @@
         EXIT_BLAST_NOT_COMPATIBLE       = 3
         EXIT_NO_BLAST_DATABASE          = 4
 
         def validate(opt)
           assert_blast_installation
-          warn_if_remote_database(opt[:db])
+          warn_if_remote_database(opt)
           assert_local_blast_database_exists(opt[:db]) if opt[:db] !~ /remote/
         end
 
         def assert_blast_installation
           # Validate BLAST installation
           assert_blast_installed
           assert_blast_compatible
         end
 
-        def warn_if_remote_database(db)
-          return if db !~ /remote/
+        def warn_if_remote_database(opt)
+          return if opt[:db] !~ /remote/
           $stderr.puts # a blank line
-          $stderr.puts 'Warning: BLAST will be carried out on remote servers.'
+          if !opt[:raw_sequences] &&
+              (opt[:validations].include?('align') ||
+               opt[:validations].include?('dup'))
+            $stderr.puts 'Warning: Hit sequences will be fetched from remote' \
+                         ' server.'
+          else
+            $stderr.puts 'Warning: BLAST will be carried out on remote server.'
+          end
           $stderr.puts 'This may take quite a bit of time.'
           $stderr.puts 'You may want to install a local BLAST database for' \
                        ' faster analyses.'
           $stderr.puts # a blank line
         end