genevalidator.gemspec in genevalidator-1.6.12 vs genevalidator.gemspec in genevalidator-2.1.3

@@ -1,49 +1,64 @@
-# coding: utf-8
-lib = File.expand_path('../lib', __FILE__)
+lib = File.expand_path('lib', __dir__)
 $LOAD_PATH.unshift(lib) unless $LOAD_PATH.include?(lib)
 require 'genevalidator/version'
 
 Gem::Specification.new do |s|
-  # meta
   s.name        = 'genevalidator'
-  s.version     =  GeneValidator::VERSION
+  s.version     = GeneValidator::VERSION
   s.authors     = ['Monica Dragan', 'Ismail Moghul', 'Anurag Priyam',
                    'Yannick Wurm']
   s.email       = '[e-mail]'
   s.homepage    = 'https://wurmlab.github.io/tools/genevalidator/'
   s.license     = 'AGPL'
   s.summary     = 'Identifying problems with gene predictions.'
   s.description = 'The tool validates the input predicted genes and provides' \
-                  ' useful information (length validation, gene merge'\
+                  ' useful information (length validation, gene merge' \
                   ' validation, sequence duplication checking, ORF finding)' \
                   ' based on the similarities to genes in public databases.'
+  s.required_ruby_version = '>= 2.2.0'
 
-  s.required_ruby_version = '>= 2.0.0'
-  s.add_development_dependency 'bundler', '~> 1.6'
-  s.add_development_dependency 'rake', '~>10.3'
-  s.add_development_dependency 'yard', '~> 0.8'
-  s.add_development_dependency 'codeclimate-test-reporter', '~> 0.4', '>= 0.4.7'
-  s.add_development_dependency('minitest', '~> 5.4')
-  s.add_dependency('bio', '~> 1.4')
-  s.add_dependency('bio-blastxmlparser', '~>2.0')
-  s.add_dependency('statsample', '2.0.1')
+  s.add_development_dependency 'minitest', '~> 5.10'
+  s.add_development_dependency 'rake', '~> 12.3'
+  s.add_development_dependency 'yard', '~> 0.9.11'
 
+  s.add_dependency 'bio', '~> 1.4'
+  s.add_dependency 'bio-blastxmlparser', '~> 2.0'
+  s.add_dependency 'genevalidatorapp', '~> 2.1.3'
+  s.add_dependency 'rack', '~> 2.0'
+  s.add_dependency 'slim', '~>3.0'
+  s.add_dependency 'statsample', '2.1.0'
+
+  # Adding mechanize gem just to silence a message on load.
+  # This is due the Statsample gem
+  # See https://github.com/SciRuby/daru/issues/404
+  # See https://github.com/SciRuby/statsample/pull/69
+  s.add_dependency 'mechanize', '2.7.5'
+
   s.files         = `git ls-files -z`.split("\x0")
   s.executables   = s.files.grep(%r{^bin/}) { |f| File.basename(f) }
   s.test_files    = s.files.grep(%r{^(test|spec|features)/})
   s.require_paths = ['lib']
 
   s.post_install_message = <<INFO
 
-------------------------------------------------------------------------
-  Thank you for validating your gene predictions with GeneValidator!
+----------------------------------------------------------------------------
+Thank you for validating your gene predictions with GeneValidator!
 
-  To launch GeneValidator execute 'genevalidator' from command line.
+==> To launch GeneValidator execute 'genevalidator' from command line.
 
-    $ genevalidator [options] FASTA_FILE
+        genevalidator [OPTIONAL ARGUMENTS] INPUT_FILE
 
-  Visit https://github.com/wurmlab/GeneValidator for more information.
-------------------------------------------------------------------------
+    See 'genevalidator --help' for more information
+
+==> To launch GeneValidator as a web application execute 'genevalidator' from command line.
+
+        genevalidator app [OPTIONAL ARGUMENTS]
+
+    See 'genevalidator app --help' for more information
+
+==> Visit https://wurmlab.github.io/tools/genevalidator/ for more information.
+
+----------------------------------------------------------------------------
 
 INFO
 end