Manifest.txt in full_lengther_next-0.0.8 vs Manifest.txt in full_lengther_next-0.5.6

@@ -1,29 +1,44 @@
+Rakefile
+script
+script/generate
+script/destroy
+script/console
+test
+test/test_full_lengther_next.rb
+test/test_helper.rb
+bin/plot_taxonomy.rb
+bin/plot_fln.rb
 bin/download_fln_dbs.rb
-bin/make_user_db.rb
 bin/full_lengther_next
+bin/make_user_db.rb
+bin/make_test_dataset.rb
+PostInstall.txt
+README.rdoc
 History.txt
-lib/full_lengther_next/classes/common_functions.rb
+Manifest.txt
+lib/full_lengther_next
+lib/full_lengther_next/classes
+lib/full_lengther_next/classes/blast_functions.rb
+lib/full_lengther_next/classes/my_worker_manager_fln.rb
+lib/full_lengther_next/classes/types.rb
 lib/full_lengther_next/classes/chimeric_seqs.rb
+lib/full_lengther_next/classes/artifacts.rb
+lib/full_lengther_next/classes/cdhit.rb
 lib/full_lengther_next/classes/fl_analysis.rb
 lib/full_lengther_next/classes/fl_string_utils.rb
-lib/full_lengther_next/classes/fln_stats.rb
-lib/full_lengther_next/classes/lcs.rb
 lib/full_lengther_next/classes/my_worker.rb
-lib/full_lengther_next/classes/my_worker_manager.rb
-lib/full_lengther_next/classes/nc_rna.rb
-lib/full_lengther_next/classes/orf.rb
 lib/full_lengther_next/classes/sequence.rb
+lib/full_lengther_next/classes/my_worker_EST.rb
 lib/full_lengther_next/classes/test_code.rb
+lib/full_lengther_next/classes/orf.rb
 lib/full_lengther_next/classes/une_los_hit.rb
+lib/full_lengther_next/classes/warnings.rb
+lib/full_lengther_next/classes/fln_stats.rb
+lib/full_lengther_next/classes/my_worker_manager_EST.rb
+lib/full_lengther_next/classes/nc_rna.rb
+lib/full_lengther_next/classes/reptrans.rb
+lib/full_lengther_next/classes/common_functions.rb
+lib/full_lengther_next/classes/exonerate_result.rb
+lib/full_lengther_next/classes/handle_db.rb
 lib/full_lengther_next.rb
-Manifest.txt
-PostInstall.txt
-Rakefile
-README.rdoc
-script
-script/console
-script/destroy
-script/generate
-test
-test/test_full_lengther_next.rb
-test/test_helper.rb
\ No newline at end of file
+lib/expresscanvas.zip