fathom.rb in fathom-0.5.0

- old
+ new
@@ -1,103 +1,66 @@
 # ================
 # = Dependencies =
 # ================
+Dir.glob("#{File.dirname(__FILE__)}/ext/*.rb").each { |file| require file}
 
-# Make decoupling easier with an informed LoadPath
-$:.unshift(File.dirname(__FILE__))
-$:.unshift(File.expand_path(File.join(File.dirname(__FILE__), 'fathom')))
+require 'uuid'
 
-require 'rubygems'
-
-require "gsl"
-require 'options_hash'
-
-require 'ext/open_struct'
-require 'ext/array'
-require 'ext/string'
-
 module Fathom
-  lib = File.expand_path(File.dirname(__FILE__))
-  $LOAD_PATH.unshift(lib)
   
-  # Autoload classes and modules so that we only load as much of the library as we're using.
-  # This allows us to have a fairly large library without taking up a lot of memory unless we need it.
-  # autoload :Node, "node"
-  # autoload :BeliefNode, "node/belief_node"
-  # autoload :DataCollection, "node/data_collection"
-  # autoload :DataNode, "node/data_node"
-  # autoload :DiscreteNode, "node/discrete_node"
-  # autoload :MCNode, "node/mc_node"
-  # autoload :PlausibleRange, "node/plausible_range"
-  # autoload :Fact, "node/fact"
-  # autoload :Decision, "node/decision"
-  # autoload :CPMNode, 'node/cpm_node'
-  # 
-  # autoload :ValueDescription, "value_description"
-  # autoload :MonteCarloSet, "monte_carlo_set"
-  # autoload :KnowledgeBase, "knowledge_base"
-  # 
-  # autoload :Import, "import"
-  # autoload :ImportNode, "import/import_node"
-  # autoload :YAMLImport, 'import/yaml_import'
-  # autoload :CSVImport, 'import/csv_import'
-  # # autoload :RDFImport, 'import/rdf_import'
-  # # autoload :SQLiteImport, 'import/sqlite_import'
-  # 
-  # autoload :Simulation, 'simulation'
-  # autoload :TickMethods, 'simulation/tick_methods'
-  # autoload :TickSimulation, 'simulation/tick_simulation'
-  # 
-  # autoload :Agent, 'agent'
-  # autoload :Properties, 'agent/properties'
-  # autoload :AgentCluster, 'agent/agent_cluster'
-  # 
-  # autoload :EnforcedName, 'node/node_extensions/enforced_name'
-  # autoload :NumericMethods, 'node/node_extensions/numeric_methods'
+  class Config
+    attr_writer :storage
+    def storage
+      @storage ||= Hash
+    end
+  end
   
-  require 'distributions'
-  module Distributions
-    autoload :Gaussian, 'distributions/gaussian'
-    autoload :Uniform, 'distributions/uniform'
-    autoload :DiscreteGaussian, 'distributions/discrete_gaussian'
-    autoload :DiscreteUniform, 'distributions/discrete_uniform'
+  # =================
+  # = Configuration =
+  # =================
+  class << self
+    # A reset-able configuration that provides access to other services (pod storage, say)
+    def config
+      @config ||= Config.new
+    end
+  
+    # The reset on the configuration
+    def reset_config!
+      @config = Config.new
+    end
   end
+  
+end
 
-  def knowledge_base
-    @knowledge_base ||= KnowledgeBase.new
-  end
-  alias :kb :knowledge_base
+def path(path)
+  File.expand_path("../fathom/#{path}", __FILE__)
 end
 
-# Temporary
-# include Fathom
+# =============
+# = Behaviors =
+# =============
+Fathom.autoload :AttributeSystem, path('behaviors/attribute_system')
+Fathom.autoload :ContextBehavior, path('behaviors/context_behavior')
+Fathom.autoload :Plugins, path('behaviors/plugins')
 
-Fathom.autoload :Node, "node"
-Fathom.autoload :BeliefNode, "node/belief_node"
-Fathom.autoload :DataCollection, "node/data_collection"
-Fathom.autoload :DataNode, "node/data_node"
-Fathom.autoload :DiscreteNode, "node/discrete_node"
-Fathom.autoload :MCNode, "node/mc_node"
-Fathom.autoload :PlausibleRange, "node/plausible_range"
-Fathom.autoload :Fact, "node/fact"
-Fathom.autoload :Decision, "node/decision"
-Fathom.autoload :CPMNode, 'node/cpm_node'
+# ===============
+# = Data Models =
+# ===============
+Fathom.autoload :AdjacencyMatrix, path('data/adjacency_matrix')
+Fathom.autoload :Definition, path('data/definition')
+Fathom.autoload :Edge, path('data/edge')
+Fathom.autoload :Network, path('data/network')
+Fathom.autoload :Outcome, path('data/outcome')
+Fathom.autoload :Property, path('data/property')
+Fathom.autoload :Variable, path('data/variable')
 
-Fathom.autoload :ValueDescription, "value_description"
-Fathom.autoload :MonteCarloSet, "monte_carlo_set"
-Fathom.autoload :KnowledgeBase, "knowledge_base"
+# ============
+# = Contexts =
+# ============
+Fathom.autoload :NetworkPopulation, path('contexts/network_population')
+Fathom.autoload :NetworkTraversal, path('contexts/network_traversal')
 
-Fathom.autoload :Import, "import"
-Fathom.autoload :ImportNode, "import/import_node"
-Fathom.autoload :YAMLImport, 'import/yaml_import'
-Fathom.autoload :CSVImport, 'import/csv_import'
-
-Fathom.autoload :Simulation, 'simulation'
-Fathom.autoload :TickMethods, 'simulation/tick_methods'
-Fathom.autoload :TickSimulation, 'simulation/tick_simulation'
-
-Fathom.autoload :Agent, 'agent'
-Fathom.autoload :Properties, 'agent/properties'
-Fathom.autoload :AgentCluster, 'agent/agent_cluster'
-
-Fathom.autoload :EnforcedName, 'node/node_extensions/enforced_name'
-Fathom.autoload :NumericMethods, 'node/node_extensions/numeric_methods'
+# =========
+# = Roles =
+# =========
+Fathom.autoload :NetworkBuilder, path('roles/network_builder')
+Fathom.autoload :GeneralGraphTools, path('roles/general_graph_tools')