README.rdoc in egor-0.0.4 vs README.rdoc in egor-0.0.5

- old
+ new

@@ -32,11 +32,11 @@ == OPTIONS: --tem-file (-f) FILE: a tem file --tem-list (-l) FILE: a list for tem files --classdef (-c) FILE: a file for the defintion of environments (default: 'classdef.dat') --outfile (-o) FILE: output filename (default 'allmat.dat') - --weight (-w) INTEGER: clustering level (PID) for the BLOSUM-like weighting - --noweight: calculate substitution counts with no weights (default) + --weight (-w) INTEGER: clustering level (PID) for the BLOSUM-like weighting (default: 60) + --noweight: calculate substitution counts with no weights --smooth (-s) INTEGER: 0 for parial smoothing (default) 1 for full smoothing --nosmooth: perform no smoothing operation --cys (-y) INTEGER: