exe/coutinho_assembly in coutinho_assembly-0.2.0 vs exe/coutinho_assembly in coutinho_assembly-0.2.1
- old
+ new
@@ -202,10 +202,10 @@
reverse_reads: fnames[:reverse_reads],
single_reads: fnames[:single_reads],
out_dir: sample_assembly_dir,
out_prefix: out_prefix,
num_threads: num_threads,
- preset: ASSEMBLY_PRESET
+ preset: megahit_preset
end
rescue Rya::MaxAttemptsExceededError => err
Rya::AbortIf.logger.error "Couldn't complete assembly #{out_prefix} after #{num_attempts}. You will have to rerun it manually."
end
end