lib/cheripic/contig.rb in cheripic-1.2.0 vs lib/cheripic/contig.rb in cheripic-1.2.5

@@ -20,20 +20,22 @@
   #   @return [String] id of the contig in assembly taken from fasta file
   # @!attribute [r] length
   #   @return [Integer] length of contig in bases
   class Contig
 
-    attr_accessor :hm_pos, :ht_pos, :hemi_pos
+    attr_accessor :hm_pos, :ht_pos, :hemi_pos, :mean_depth, :sd_depth
     attr_reader :id, :length
 
     # creates a Contig object using fasta entry
     # @param fasta [Bio::FastaFormat] an individual fasta entry from input assembly file
     def initialize (fasta)
       @id = fasta.entry_id
       @length = fasta.length
       @hm_pos = {}
       @ht_pos = {}
       @hemi_pos = {}
+      @mean_depth = nil
+      @sd_depth = nil
     end
 
     # Number of homozygous variants identified in the contig
     # @return [Integer]
     def hm_num