test_genbank.rb in bio-1.5.0

- old
+ new

@@ -200,11 +200,11 @@
  "Saccharomycetes",
  "Saccharomycetales",
  "Saccharomycetaceae",
  "Saccharomyces"]
       assert_equal(expected, @obj.classification)
-    end
+   end
 
     def test_strandedness
       assert_equal(nil, @obj.strandedness)
     end
 
@@ -220,14 +220,14 @@
       expected_molecule_type = "DNA"
       expected_division = "PLN"
       expected_topology = "linear"
       expected_strandedness = nil
       expected_keywords = []
-      expected_sequence_version = "1"
-      expected_date_modified = "2010-03-23"
+      expected_sequence_version = 1
+      expected_date_modified = Date.parse("2010-03-23")
       expected_definition = "Saccharomyces cerevisiae TCP1-beta gene, partial cds; and Axl2p (AXL2) and Rev7p (REV7) genes, complete cds."
-      expected_species = []
+      expected_species = 'Saccharomyces cerevisiae'
       expected_classification= ["Eukaryota", "Fungi", "Dikarya", "Ascomycota", "Saccharomyceta", "Saccharomycotina", "Saccharomycetes", "Saccharomycetales", "Saccharomycetaceae", "Saccharomyces"]
       expected_comments = ""
       expected_references = [{
   :abstract=>"",
   :affiliations=>[],
@@ -351,12 +351,18 @@
       assert_equal(expected_primary_accession, seq.primary_accession)
       assert_equal(expected_secondary_accessions, seq.secondary_accessions)
       seqids = seq.other_seqids.first
       actual_other_seqids = [seqids.id, seqids.database, seqids.secondary_ids]
       assert_equal(expected_other_seqids, actual_other_seqids)
+      assert_equal(expected_molecule_type, seq.molecule_type)
       assert_equal(expected_division, seq.division)
+      assert_equal(expected_topology, seq.topology)
       assert_equal(expected_strandedness, seq.strandedness)
       assert_equal(expected_keywords, seq.keywords)
+      assert_equal(expected_sequence_version, seq.sequence_version)
+      assert_equal(expected_date_modified, seq.date_modified)
+      assert_equal(expected_definition, seq.definition)
+      assert_equal(expected_species, seq.species)
       assert_equal(expected_classification, seq.classification)
       assert_equal(expected_comments, seq.comments)
       refs = seq.references
       actual_references = []
       refs.each do |ref|