lib/bio-ucsc/petmar1.rb in bio-ucsc-api-0.3.1 vs lib/bio-ucsc/petmar1.rb in bio-ucsc-api-0.4.0

@@ -1,22 +1,23 @@
 #
 # = AUTOMATIC Table Definition of the Lamprey Mar. 2007 (WUGSC 3.0/petMar1) assembly
-# Copyright::   Copyright (C) 2011
+# Copyright::   Copyright (C) 2011, 2012
 #               MISHIMA, Hiroyuki
 #               <missy at be.to / hmishima at nagasaki-u.ac.jp> 
 # License::     The Ruby licence (Ryby's / GPLv2 dual)
 #
 
-require "#{File.dirname(__FILE__)}/petmar1/db_connection"
-require "#{File.dirname(__FILE__)}/table_class_detector"
+require "#{::File.dirname(__FILE__)}/db_connector"
+require "#{::File.dirname(__FILE__)}/table_class_detector"
 
 module Bio
   module Ucsc
     module PetMar1
       CHROMS = %() # many contigs
-
       extend TableClassDetector
+      include DBConnector
+      DBConnection.database "petMar1"
 
-      base = "#{File.dirname(__FILE__)}/gasacu1"
+      base = "#{::File.dirname(__FILE__)}/petMar1"
     end
   end
 end