Gemfile in bio-ucsc-api-0.5.3 vs Gemfile in bio-ucsc-api-0.6.0

@@ -1,21 +1,22 @@
 source "http://rubygems.org"
 # Add dependencies required to use your gem here.
-# Example:
-#   gem "activesupport", ">= 2.3.5"
-gem "activerecord",         "~> 3.0.7"
-gem "activesupport",        "~> 3.0.7"
-gem "mysql",                "~> 2.8.1"
-gem "bio-genomic-interval", ">= 0.1.2"
-gem "safe_attributes",      ">= 1.0.8"
 
+gem "activerecord",                    "~> 4.0.2"
+gem "activesupport",                   "~> 4.0.2"
+gem "mysql",                           "~> 2.9.1"
+gem "safe_attributes",                 "~> 1.0.10"
+gem "activerecord-deprecated_finders", "~> 1.0.3"
+gem "bio-genomic-interval",            ">= 0.1.2"
+
+
 # Add dependencies to develop your gem here.
 # Include everything needed to run rake, tests, features, etc.
 group :development do
-  gem "rake", "~> 10.1.0" # was "~> 0.9.2.2"
-  gem "rspec", "~> 2.9.0" # was ~> 2.5.0
-  gem "bundler", "~> 1.3.5" # was ~>1.1.0 was ~> 1.0.0
-  gem "jeweler", "~> 1.8.3" # was ~> 1.5.2
-  gem "bio", ">= 1.4.1"
-  gem "rdoc", ">= 3.9.1"
+  gem "rake",    "~> 10.1.0" 
+  gem "rspec",   "~> 2.14.1"
+  gem "bundler", "~> 1.3.5"
+  gem "jeweler", "~> 1.8.8"
+  gem "bio",     ">= 1.4.3"
+  gem "rdoc",    ">= 4.0.1"
   # gem "simplecov", :require => false, :group => :test
 end