doc/Bio/DB.html in bio-samtools-0.6.2 vs doc/Bio/DB.html in bio-samtools-2.0.3
- old
+ new
@@ -1,144 +1,86 @@
<!DOCTYPE html>
<html>
<head>
-<meta content="text/html; charset=UTF-8" http-equiv="Content-Type">
+<meta charset="UTF-8">
<title>class Bio::DB - Pileup</title>
-<link type="text/css" media="screen" href="../rdoc.css" rel="stylesheet">
+<link href="../fonts.css" rel="stylesheet">
+<link href="../rdoc.css" rel="stylesheet">
<script type="text/javascript">
var rdoc_rel_prefix = "../";
</script>
-<script type="text/javascript" charset="utf-8" src="../js/jquery.js"></script>
-<script type="text/javascript" charset="utf-8" src="../js/navigation.js"></script>
-<script type="text/javascript" charset="utf-8" src="../js/search_index.js"></script>
-<script type="text/javascript" charset="utf-8" src="../js/search.js"></script>
-<script type="text/javascript" charset="utf-8" src="../js/searcher.js"></script>
-<script type="text/javascript" charset="utf-8" src="../js/darkfish.js"></script>
+<script src="../js/jquery.js"></script>
+<script src="../js/navigation.js"></script>
+<script src="../js/search_index.js"></script>
+<script src="../js/search.js"></script>
+<script src="../js/searcher.js"></script>
+<script src="../js/darkfish.js"></script>
-<body id="top" class="class">
-<nav id="metadata">
- <nav id="home-section" class="section">
- <h3 class="section-header">
- <a href="../index.html">Home</a>
+<body id="top" role="document" class="class">
+<nav role="navigation">
+ <div id="project-navigation">
+ <div id="home-section" role="region" title="Quick navigation" class="nav-section">
+ <h2>
+ <a href="../index.html" rel="home">Home</a>
+ </h2>
+
+ <div id="table-of-contents-navigation">
+ <a href="../table_of_contents.html#pages">Pages</a>
<a href="../table_of_contents.html#classes">Classes</a>
<a href="../table_of_contents.html#methods">Methods</a>
- </h3>
-</nav>
+ </div>
+</div>
-
- <nav id="search-section" class="section project-section" class="initially-hidden">
+ <div id="search-section" role="search" class="project-section initially-hidden">
<form action="#" method="get" accept-charset="utf-8">
- <h3 class="section-header">
- <input type="text" name="search" placeholder="Search" id="search-field"
+ <div id="search-field-wrapper">
+ <input id="search-field" role="combobox" aria-label="Search"
+ aria-autocomplete="list" aria-controls="search-results"
+ type="text" name="search" placeholder="Search" spellcheck="false"
title="Type to search, Up and Down to navigate, Enter to load">
- </h3>
+ </div>
+
+ <ul id="search-results" aria-label="Search Results"
+ aria-busy="false" aria-expanded="false"
+ aria-atomic="false" class="initially-hidden"></ul>
</form>
+</div>
- <ul id="search-results" class="initially-hidden"></ul>
-</nav>
-
-
- <div id="file-metadata">
- <nav id="file-list-section" class="section">
- <h3 class="section-header">Defined In</h3>
- <ul>
- <li>lib/bio/db/pileup.rb
- <li>lib/bio/db/sam/bam.rb
- <li>lib/bio/db/sam/faidx.rb
- <li>lib/bio/db/sam/library.rb
- <li>lib/bio/db/sam/sam.rb
- <li>lib/bio/db/sam.rb
- <li>lib/bio/db/vcf.rb
- </ul>
-</nav>
-
-
</div>
+
+
<div id="class-metadata">
- <nav id="parent-class-section" class="section">
- <h3 class="section-header">Parent</h3>
+ <div id="parent-class-section" class="nav-section">
+ <h3>Parent</h3>
+
<p class="link">Object
-</nav>
+</div>
+
</div>
-
- <div id="project-metadata">
- <nav id="fileindex-section" class="section project-section">
- <h3 class="section-header">Pages</h3>
-
- <ul>
-
- <li class="file"><a href="../LICENSE_txt.html">LICENSE</a>
-
- </ul>
</nav>
- <nav id="classindex-section" class="section project-section">
- <h3 class="section-header">Class and Module Index</h3>
+<main role="main" aria-labelledby="class-Bio::DB">
+ <h1 id="class-Bio::DB" class="class">
+ class Bio::DB
+ </h1>
- <ul class="link-list">
-
- <li><a href="../Bio.html">Bio</a>
-
- <li><a href="../Bio/DB.html">Bio::DB</a>
-
- <li><a href="../Bio/DB/Alignment.html">Bio::DB::Alignment</a>
-
- <li><a href="../Bio/DB/Pileup.html">Bio::DB::Pileup</a>
-
- <li><a href="../Bio/DB/SAM.html">Bio::DB::SAM</a>
-
- <li><a href="../Bio/DB/SAM/Library.html">Bio::DB::SAM::Library</a>
-
- <li><a href="../Bio/DB/SAM/Tools.html">Bio::DB::SAM::Tools</a>
-
- <li><a href="../Bio/DB/SAM/Tools/Bam1CoreT.html">Bio::DB::SAM::Tools::Bam1CoreT</a>
-
- <li><a href="../Bio/DB/SAM/Tools/Bam1T.html">Bio::DB::SAM::Tools::Bam1T</a>
-
- <li><a href="../Bio/DB/SAM/Tools/BamHeaderT.html">Bio::DB::SAM::Tools::BamHeaderT</a>
-
- <li><a href="../Bio/DB/SAM/Tools/BamPileup1T.html">Bio::DB::SAM::Tools::BamPileup1T</a>
-
- <li><a href="../Bio/DB/SAM/Tools/SamfileT.html">Bio::DB::SAM::Tools::SamfileT</a>
-
- <li><a href="../Bio/DB/SAM/Tools/SamfileTX.html">Bio::DB::SAM::Tools::SamfileTX</a>
-
- <li><a href="../Bio/DB/SAMException.html">Bio::DB::SAMException</a>
-
- <li><a href="../Bio/DB/Sam.html">Bio::DB::Sam</a>
-
- <li><a href="../Bio/DB/Tag.html">Bio::DB::Tag</a>
-
- <li><a href="../Bio/DB/Vcf.html">Bio::DB::Vcf</a>
-
- <li><a href="../LibC.html">LibC</a>
-
- </ul>
-</nav>
-
- </div>
-</nav>
-
-<div id="documentation">
- <h1 class="class">class Bio::DB</h1>
-
- <div id="description" class="description">
+ <section class="description">
- </div><!-- description -->
+ </section>
<section id="5Buntitled-5D" class="documentation-section">
@@ -148,18 +90,16 @@
- <!-- Methods -->
- </section><!-- 5Buntitled-5D -->
+ </section>
+</main>
-</div><!-- documentation -->
-
-<footer id="validator-badges">
- <p><a href="http://validator.w3.org/check/referer">[Validate]</a>
- <p>Generated by <a href="https://github.com/rdoc/rdoc">RDoc</a> 3.12.
- <p>Generated with the <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish Rdoc Generator</a> 3.
+<footer id="validator-badges" role="contentinfo">
+ <p><a href="http://validator.w3.org/check/referer">Validate</a>
+ <p>Generated by <a href="http://rdoc.rubyforge.org">RDoc</a> 4.1.1.
+ <p>Based on <a href="http://deveiate.org/projects/Darkfish-Rdoc/">Darkfish</a> by <a href="http://deveiate.org">Michael Granger</a>.
</footer>