README.rdoc in bio-samtools-0.2.5 vs README.rdoc in bio-samtools-0.3.0

@@ -11,33 +11,20 @@
 
 This project was born from the need to add support of BAM files to 
 the gee_fu genome browser (http://github.com/danmaclean/gee_fu). 
 
 == Installation
-At the moment, the only way to "install" the module is to copy it to copy the content 
-of the lib folder on any lib folder you have. You must also copy your libbam.a (linux)
-or libbam.dll (windows) from samtools. If you have a Mac, add the following variable
-to the makefile of samtools
+'gem install bio-samtools'
 
-DYFLAGS 	= -dynamiclib -lz
-
-and the following target:
-dylib: libbam.dylib
-libbam.dylib:$(LOBJS)
-		$(CC) $(CFLAGS) $(DYFLAGS) -o libbam.dylib $(LOBJS)
-
-Then, run 
-
-make dylib
-
-Finally, you copy the .dylib file to your lib folder. 
-
 == Usage
-The easiest way to see in "action" samtools-ruby to call
-rake test. 
+The easiest way to see bio-samtools in action is to try the tests
+rake basic_test 
+rake pileup_test
 
+See doc/tutorial.html or doc/tutorial.pdf for a walkthrough tutorial
 
+
 == Dependencies:
 -FFI (http://github.com/ffi/ffi)
 -libbam
 	This can be obtained from samtools.  (http://samtools.sourceforge.net/ )
 	
@@ -48,12 +35,12 @@
 	-When you try to lad a binary file as a text file
 
 If this is not the problem, or you have any other question,  don´t hesitate on 
 dropping a line to
 Ricardo dot Ramirez-Gonzalez at bbsrc dot ac dot uk
[e-mail]
 
 == TODO
--Write a gem to install it
 -Filter to the fetching algorithm (give a condition that has to be satisfied to add the alignment to the list)
 -Examples of how to use it, besides the test folder
 -Operating system independent, DONE ( test needed)
 
 == IMPORTANT NOTE