data_cube_spec.rb in bio-publisci-0.1.0

- old
+ new

@@ -50,16 +50,18 @@
 				missingobs.map{|k,v| @missing_data[k] << v}
 			end
 
 			it "skips observations with missing values by default" do
 				turtle_string = @generator.generate(@measures, @dimensions, @codes,	@missing_data, @labels + ["missingbacon"], 'bacon')
-				turtle_string[/.*obsmissingbacon.*\n/].should be nil
-			end
+        turtle_string[/.*obsmissingbacon.*\n/].should_not be nil
+        turtle_string[/\S+obsmissingbacon.*prop:chunkiness.*\n\n/m].should be nil
+      end
 
-			it "includes observations with missing values if flag is set" do
-				turtle_string = @generator.generate(@measures, @dimensions, @codes,	@missing_data, @labels + ["missingbacon"], 'bacon',{encode_nulls: true})
-				turtle_string[/.*obsmissingbacon.*\n/].should_not be nil
+      it "includes observations with missing values if flag is set" do
+        turtle_string = @generator.generate(@measures, @dimensions, @codes, @missing_data, @labels + ["missingbacon"], 'bacon',{encode_nulls: true})
+        turtle_string[/.*obsmissingbacon.*\n/].should_not be nil
+  			turtle_string[/\S+obsmissingbacon.*prop:chunkiness.*\n\n/m].should_not be nil
 			end
 
 		end
 
 		it 'generates prefixes' do
@@ -100,67 +102,68 @@
 
 				observations = @generator.observations(@measures, @dimensions, @codes, @data, @labels, "bacon")
 				observations.is_a?(Array).should == true
 				observations.first.is_a?(String).should == true
 			end
-	end
 
-  context "under official integrity constraints" do
-  	before(:all) do
-  		@graph = RDF::Graph.load(File.dirname(__FILE__) + '/turtle/reference', :format => :ttl)
-			@checks = {}
-			Dir.foreach(File.dirname(__FILE__) + '/queries/integrity') do |file|
-				if file.split('.').last == 'rq'
-					@checks[file.split('.').first] = IO.read(File.dirname(__FILE__) + '/queries/integrity/' + file)
-				end
-			end
-  	end
+      it "coerces single values into arrays" do
+        newdata = Hash[@data.map{|k,v| [k,v.first] }]
+        observations = @generator.observations(@measures, @dimensions, @codes, newdata, @labels[0], "bacon")
+        observations.is_a?(Array).should == true
+        observations.first.is_a?(String).should == true
+      end
+  end
 
-  	it 'obeys IC-1, has a unique dataset for each observation' do
-  		SPARQL.execute(@checks['1'], @graph).first.should be_nil
-  	end
 
-  	it 'obeys IC-2, has a unique data structure definition of each dataset' do
-  		SPARQL.execute(@checks['2'], @graph).first.should be_nil
-  	end
+  context "under official integrity constraints" do
+    before(:all) do
+      @graph = RDF::Graph.load(File.dirname(__FILE__) + '/turtle/reference', :format => :ttl)
+      @checks = {}
+      Dir.foreach(File.dirname(__FILE__) + '/queries/integrity') do |file|
+        if file.split('.').last == 'rq'
+          @checks[file.split('.').first] = IO.read(File.dirname(__FILE__) + '/queries/integrity/' + file)
+        end
+      end
+    end
 
-  	it 'obeys IC-3, has a measure property specified for each dataset' do
-  		SPARQL.execute(@checks['3'], @graph).first.should be_nil
-  	end
+    it 'obeys IC-1, has a unique dataset for each observation' do
+      SPARQL.execute(@checks['1'], @graph).first.should be_nil
+    end
 
-  	it 'obeys IC-4, specifies a range for all dimensions' do
-  		SPARQL.execute(@checks['4'], @graph).first.should be_nil
-  	end
+    it 'obeys IC-2, has a unique data structure definition of each dataset' do
+      SPARQL.execute(@checks['2'], @graph).first.should be_nil
+    end
 
-  	it 'obeys IC-5, every dimension with range skos:Concept must have a qb:codeList' do
-  		SPARQL.execute(@checks['5'], @graph).first.should be_nil
-  	end
+    it 'obeys IC-3, has a measure property specified for each dataset' do
+      SPARQL.execute(@checks['3'], @graph).first.should be_nil
+    end
 
-  	it 'obeys IC-11, has a value for each dimension in every observation' do
-  		SPARQL.execute(@checks['11'], @graph).first.should be_nil
-  	end
+    it 'obeys IC-4, specifies a range for all dimensions' do
+      SPARQL.execute(@checks['4'], @graph).first.should be_nil
+    end
 
-  	## currently locks up. possible bug in SPARQL gem parsing?
-  	## works fine as a raw query
-  	# it 'obeys IC-12, has do duplicate observations' do
-  	# 	SPARQL.execute(@checks['12'], @graph).first.should be_nil
-  	# end
+    it 'obeys IC-5, every dimension with range skos:Concept must have a qb:codeList' do
+      SPARQL.execute(@checks['5'], @graph).first.should be_nil
+    end
 
-  	it 'obeys IC-14, has a value for each measure in every observation' do
-  		SPARQL.execute(@checks['14'], @graph).first.should be_nil
-  	end
+    it 'obeys IC-11, has a value for each dimension in every observation' do
+      SPARQL.execute(@checks['11'], @graph).first.should be_nil
+    end
 
-  	it 'obeys IC-19, all codes for each codeList are included' do
-  		SPARQL.execute(@checks['19_1'], @graph).first.should be_nil
-  		## second query for IC-19 uses property paths that aren't as easy to
-  		## convert to sparql 1.0, so for now I've left it out
-  		# SPARQL.execute(@checks['19_2'], @graph).first.should be_nil
-  	end
-  end
+    ## currently locks up. possible bug in SPARQL gem parsing?
+    ## works fine as a raw query
+    # it 'obeys IC-12, has do duplicate observations' do
+    #   SPARQL.execute(@checks['12'], @graph).first.should be_nil
+    # end
 
+    it 'obeys IC-14, has a value for each measure in every observation' do
+      SPARQL.execute(@checks['14'], @graph).first.should be_nil
+    end
 
-		it "can set dimensions vs measures via hash" do
-
-		end
-
-
+    it 'obeys IC-19, all codes for each codeList are included' do
+      SPARQL.execute(@checks['19_1'], @graph).first.should be_nil
+      ## second query for IC-19 uses property paths that aren't as easy to
+      ## convert to sparql 1.0, so for now I've left it out
+      # SPARQL.execute(@checks['19_2'], @graph).first.should be_nil
+    end
+  end
 end
\ No newline at end of file