lib/bio/db/primer3.rb in bio-polyploid-tools-0.9.9 vs lib/bio/db/primer3.rb in bio-polyploid-tools-0.9.10

@@ -550,10 +550,21 @@
     end
 
     #CL3339Contig1:T509C AvocetS chromosome_specific exon 4D forward 
     def parse_header
       #puts "Parsing header: '#{self.sequence_id}'"
-      @snp, @line, @type, @in, @polymorphism, @chromosome, @orientation   = self.sequence_id.split(" ")  
+      arr = self.sequence_id.split(" ")
+
+      #if arr.size == 7 This validation can be useful to get the best primers regardless of the chromosome, 
+      #But it is commented as it will require further testing. 
+      @snp, @line, @type, @in, @polymorphism, @chromosome, @orientation  = arr  
+      #else 
+      #  if arr.size == 6
+      #    @snp, @line, @type, @in, @polymorphism, @orientation  = arr
+      #    @chromosome = ""   
+      #  end 
+      #end
+
       @type = @type.to_sym
       if @in
         @in = @in.to_sym == :exon 
       else
         @exon = false