lib/bio/db/primer3.rb in bio-polyploid-tools-0.8.6 vs lib/bio/db/primer3.rb in bio-polyploid-tools-0.8.7

@@ -58,10 +58,11 @@
     attr_accessor :used_contigs
     attr_accessor :snp_from
     attr_accessor :regions
     attr_accessor :primer3_errors
     attr_accessor :repetitive
+    attr_accessor :hit_count
     
     def line_1_name
       "#{gene}:#{position}#{original}>#{snp} #{line_1}}"
     end
 
@@ -247,10 +248,11 @@
     end
 
     def print_primers
       to_print = values.dup
       to_print << @repetitive
+      to_print << hit_count
       to_print.join(",")
     end
 
     def found_primers?
       return self.values[7] && self.values[7] != nil
@@ -763,10 +765,11 @@
       snp.original = snp_in.original
       snp.primer3_errors = Set.new snp_in.errors
       snp.position = snp_in.position
       snp.snp = snp_in.snp
       snp.repetitive = snp_in.repetitive
-
+      #puts snp_in.inspect
+      snp.hit_count = snp_in.hit_count
       snp.line_1 = @line_1
       snp.line_2 = @line_2 
       snp.snp_from = snp_in
       snp.regions = snp_in.exon_list.values.collect { |x|  x.collect {|y| y.target_region.to_s }}
       @snp_hash[snp.to_s] = snp