lib/bio/db/primer3.rb in bio-polyploid-tools-0.8.5 vs lib/bio/db/primer3.rb in bio-polyploid-tools-0.8.6

@@ -111,22 +111,21 @@
       return @values if @values
       left_start = 0
       left_end = 0
       right_start = 0
       right_end = 0
-      total_columns_before_messages=18
+      total_columns_before_messages=17
       #puts "Values in primer3"
       #puts snp_from.inspect
       @values = Array.new
       #@values << "#{gene},,#{template_length},"
       @values << gene
       @values << "#{original}#{position}#{snp}"
       @values << template_length
       @values << snp_from.chromosome
       @values << regions.size
       @values << regions.join("|")
-      @values << repetitive
       if primer3_line_1 and primer3_line_2
         @values <<  primer3_line_1.polymorphism
 
         #Block that searches both if both pairs have a TM
         primer_2 = primer3_line_2.left_primer_with_coordinates(primer3_line_1.left_coordinates, primer3_line_1.orientation)
@@ -246,10 +245,12 @@
       end
       return @values
     end
 
     def print_primers
-      self.values.join(",")
+      to_print = values.dup
+      to_print << @repetitive
+      to_print.join(",")
     end
 
     def found_primers?
       return self.values[7] && self.values[7] != nil
     end