lib/bio/db/primer3.rb in bio-polyploid-tools-0.8.0 vs lib/bio/db/primer3.rb in bio-polyploid-tools-0.8.1

@@ -111,10 +111,12 @@
       left_start = 0
       left_end = 0
       right_start = 0
       right_end = 0
       total_columns_before_messages=17
+      #puts "Values in primer3"
+      #puts snp_from.inspect
       @values = Array.new
       #@values << "#{gene},,#{template_length},"
       @values << gene
       @values << "#{original}#{position}#{snp}"
       @values << template_length
@@ -761,10 +763,10 @@
       snp.snp = snp_in.snp
 
       snp.line_1 = @line_1
       snp.line_2 = @line_2 
       snp.snp_from = snp_in
-      snp.regions = snp_in.exon_list.values.collect { |x| x.target_region.to_s }
+      snp.regions = snp_in.exon_list.values.collect { |x|  x.collect {|y| y.target_region.to_s }}
       @snp_hash[snp.to_s] = snp
       snp
     end
 
     def add_primers_file(filename)