lib/bio/PolyploidTools/Marker.rb in bio-polyploid-tools-0.1.0 vs lib/bio/PolyploidTools/Marker.rb in bio-polyploid-tools-0.2.3

@@ -124,15 +124,15 @@
       end
       fasta.close
     end
 
     def global_reference(reference)
-      @global_reference = Bio::DB::Fasta::FastaFile.new(reference)
+      @global_reference = Bio::DB::Fasta::FastaFile.new({:fasta=>reference})
       @global_reference.load_fai_entries
     end
 
     def reference(reference)
-      @reference = Bio::DB::Fasta::FastaFile.new(reference)
+      @reference = Bio::DB::Fasta::FastaFile.new({:fasta=>reference})
       @reference.load_fai_entries
     end
 
     def print_fasta_contigs_from_reference(filename)
       if File.exist?(filename) 
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