ExonContainer.rb in bio-polyploid-tools-0.9.5

- old
+ new

@@ -216,10 +216,10 @@
     end
 
     def remove_alignments_over_max_hits
       @snp_map.each_pair do | gene, snp_array| 
         snp_array.each do |snp|
-          total_hits = snp.exon_list.map { |e| e.size }.reduce(0,:+)
+          total_hits = snp.exon_list.map {|e| e[1].size}.reduce(0,:+)
           snp.hit_count = total_hits
           if total_hits > max_hits
             snp.exon_list = {} 
             snp.repetitive = true
             snp.errors << "The marker is in a repetitive region (#{total_hits} hits to reference)"
\ No newline at end of file