bio-polyploid-tools.gemspec in bio-polyploid-tools-1.2.0 vs bio-polyploid-tools.gemspec in bio-polyploid-tools-1.2.1

@@ -1,19 +1,19 @@
 # Generated by juwelier
 # DO NOT EDIT THIS FILE DIRECTLY
 # Instead, edit Juwelier::Tasks in Rakefile, and run 'rake gemspec'
 # -*- encoding: utf-8 -*-
-# stub: bio-polyploid-tools 1.2.0 ruby lib
+# stub: bio-polyploid-tools 1.2.1 ruby lib
 
 Gem::Specification.new do |s|
   s.name = "bio-polyploid-tools".freeze
-  s.version = "1.2.0"
+  s.version = "1.2.1"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0".freeze) if s.respond_to? :required_rubygems_version=
   s.require_paths = ["lib".freeze]
   s.authors = ["Ricardo H.  Ramirez-Gonzalez".freeze]
-  s.date = "2020-10-28"
+  s.date = "2021-05-10"
   s.description = "Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat".freeze
   s.email = "[e-mail]".freeze
   s.executables = ["bfr.rb".freeze, "blast_triads.rb".freeze, "blast_triads_promoters.rb".freeze, "count_variations.rb".freeze, "filter_blat_by_target_coverage.rb".freeze, "filter_exonerate_by_identity.rb".freeze, "find_best_blat_hit.rb".freeze, "find_best_exonerate.rb".freeze, "get_longest_hsp_blastx_triads.rb".freeze, "hexaploid_primers.rb".freeze, "homokaryot_primers.rb".freeze, "mafft_triads.rb".freeze, "mafft_triads_promoters.rb".freeze, "map_markers_to_contigs.rb".freeze, "marker_to_vcf.rb".freeze, "markers_in_region.rb".freeze, "mask_triads.rb".freeze, "polymarker.rb".freeze, "polymarker_capillary.rb".freeze, "polymarker_deletions.rb".freeze, "snp_position_to_polymarker.rb".freeze, "snps_between_bams.rb".freeze, "tag_stats.rb".freeze, "vcfLineToTable.rb".freeze, "vcfToPolyMarker.rb".freeze]
   s.extra_rdoc_files = [
     "README.md"
@@ -103,17 +103,11 @@
     "lib/bioruby-polyploid-tools.rb",
     "test/data/7B_amplicon_test.fa",
     "test/data/7B_amplicon_test.fa.fai",
     "test/data/7B_amplicon_test_reference.fa",
     "test/data/7B_amplicon_test_reference.fa.fai",
-    "test/data/7B_amplicon_test_reference.fa.ndb",
-    "test/data/7B_amplicon_test_reference.fa.nhr",
-    "test/data/7B_amplicon_test_reference.fa.nin",
-    "test/data/7B_amplicon_test_reference.fa.not",
-    "test/data/7B_amplicon_test_reference.fa.nsq",
-    "test/data/7B_amplicon_test_reference.fa.ntf",
-    "test/data/7B_amplicon_test_reference.fa.nto",
+    "test/data/7B_marker_test.txt",
     "test/data/BS00068396_51.fa",
     "test/data/BS00068396_51_blast.tab",
     "test/data/BS00068396_51_contigs.aln",
     "test/data/BS00068396_51_contigs.dnd",
     "test/data/BS00068396_51_contigs.fa",
@@ -139,10 +133,17 @@
     "test/data/LIB1722.bam",
     "test/data/LIB1722.bam.bai",
     "test/data/PST130_7067.csv",
     "test/data/PST130_7067.fa",
     "test/data/PST130_7067.fa.fai",
+    "test/data/PST130_7067.fa.ndb",
+    "test/data/PST130_7067.fa.nhr",
+    "test/data/PST130_7067.fa.nin",
+    "test/data/PST130_7067.fa.not",
+    "test/data/PST130_7067.fa.nsq",
+    "test/data/PST130_7067.fa.ntf",
+    "test/data/PST130_7067.fa.nto",
     "test/data/PST130_reverse_primer.csv",
     "test/data/S22380157.fa",
     "test/data/S22380157.fa.fai",
     "test/data/S22380157.vcf",
     "test/data/S58861868/LIB1716.bam",
@@ -188,15 +189,16 @@
     "test/data/test_primer3_error_contigs.fa",
     "test/test_bfr.rb",
     "test/test_blast.rb",
     "test/test_exon_container.rb",
     "test/test_exonearate.rb",
+    "test/test_integration.rb",
     "test/test_snp_parsing.rb",
     "test/test_wrong_selection.sh"
   ]
   s.homepage = "http://github.com/tgac/bioruby-polyploid-tools".freeze
   s.licenses = ["MIT".freeze]
-  s.rubygems_version = "3.1.2".freeze
+  s.rubygems_version = "3.1.4".freeze
   s.summary = "Tool to work with polyploids, NGS and molecular biology".freeze
 
   if s.respond_to? :specification_version then
     s.specification_version = 4
   end