bio-polyploid-tools.gemspec in bio-polyploid-tools-0.8.3 vs bio-polyploid-tools.gemspec in bio-polyploid-tools-0.8.4

@@ -1,22 +1,22 @@
 # Generated by juwelier
 # DO NOT EDIT THIS FILE DIRECTLY
 # Instead, edit Juwelier::Tasks in Rakefile, and run 'rake gemspec'
 # -*- encoding: utf-8 -*-
-# stub: bio-polyploid-tools 0.8.3 ruby lib
+# stub: bio-polyploid-tools 0.8.4 ruby lib
 
 Gem::Specification.new do |s|
   s.name = "bio-polyploid-tools".freeze
-  s.version = "0.8.3"
+  s.version = "0.8.4"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0".freeze) if s.respond_to? :required_rubygems_version=
   s.require_paths = ["lib".freeze]
   s.authors = ["Ricardo H.  Ramirez-Gonzalez".freeze]
-  s.date = "2018-01-23"
+  s.date = "2018-02-27"
   s.description = "Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat".freeze
   s.email = "[e-mail]".freeze
-  s.executables = ["bfr.rb".freeze, "blast_triads.rb".freeze, "blast_triads_promoters.rb".freeze, "count_variations.rb".freeze, "filter_blat_by_target_coverage.rb".freeze, "filter_exonerate_by_identity.rb".freeze, "find_best_blat_hit.rb".freeze, "find_best_exonerate.rb".freeze, "find_homoeologue_variations.rb".freeze, "get_longest_hsp_blastx_triads.rb".freeze, "hexaploid_primers.rb".freeze, "homokaryot_primers.rb".freeze, "mafft_triads.rb".freeze, "mafft_triads_promoters.rb".freeze, "map_markers_to_contigs.rb".freeze, "markers_in_region.rb".freeze, "polymarker.rb".freeze, "polymarker_capillary.rb".freeze, "snp_position_to_polymarker.rb".freeze, "snps_between_bams.rb".freeze, "vcfLineToTable.rb".freeze]
+  s.executables = ["bfr.rb".freeze, "blast_triads.rb".freeze, "blast_triads_promoters.rb".freeze, "count_variations.rb".freeze, "filter_blat_by_target_coverage.rb".freeze, "filter_exonerate_by_identity.rb".freeze, "find_best_blat_hit.rb".freeze, "find_best_exonerate.rb".freeze, "find_homoeologue_variations.rb".freeze, "get_longest_hsp_blastx_triads.rb".freeze, "hexaploid_primers.rb".freeze, "homokaryot_primers.rb".freeze, "mafft_triads.rb".freeze, "mafft_triads_promoters.rb".freeze, "map_markers_to_contigs.rb".freeze, "markers_in_region.rb".freeze, "mask_triads.rb".freeze, "polymarker.rb".freeze, "polymarker_capillary.rb".freeze, "snp_position_to_polymarker.rb".freeze, "snps_between_bams.rb".freeze, "tag_stats.rb".freeze, "vcfLineToTable.rb".freeze]
   s.extra_rdoc_files = [
     "README",
     "README.md"
   ]
   s.files = [
@@ -40,14 +40,16 @@
     "bin/homokaryot_primers.rb",
     "bin/mafft_triads.rb",
     "bin/mafft_triads_promoters.rb",
     "bin/map_markers_to_contigs.rb",
     "bin/markers_in_region.rb",
+    "bin/mask_triads.rb",
     "bin/polymarker.rb",
     "bin/polymarker_capillary.rb",
     "bin/snp_position_to_polymarker.rb",
     "bin/snps_between_bams.rb",
+    "bin/tag_stats.rb",
     "bin/vcfLineToTable.rb",
     "bio-polyploid-tools.gemspec",
     "conf/defaults.rb",
     "conf/primer3_config/dangle.dh",
     "conf/primer3_config/dangle.ds",
@@ -86,10 +88,11 @@
     "lib/bio/BFRTools.rb",
     "lib/bio/BIOExtensions.rb",
     "lib/bio/PolyploidTools/ChromosomeArm.rb",
     "lib/bio/PolyploidTools/ExonContainer.rb",
     "lib/bio/PolyploidTools/Marker.rb",
+    "lib/bio/PolyploidTools/Mask.rb",
     "lib/bio/PolyploidTools/NoSNPSequence.rb",
     "lib/bio/PolyploidTools/PrimerRegion.rb",
     "lib/bio/PolyploidTools/SNP.rb",
     "lib/bio/PolyploidTools/SNPMutant.rb",
     "lib/bio/PolyploidTools/SNPSequence.rb",
@@ -170,33 +173,36 @@
     "test/test_snp_parsing.rb",
     "test/test_wrong_selection.sh"
   ]
   s.homepage = "http://github.com/tgac/bioruby-polyploid-tools".freeze
   s.licenses = ["MIT".freeze]
-  s.rubygems_version = "2.6.14".freeze
+  s.rubygems_version = "2.7.4".freeze
   s.summary = "Tool to work with polyploids, NGS and molecular biology".freeze
 
   if s.respond_to? :specification_version then
     s.specification_version = 4
 
     if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
       s.add_runtime_dependency(%q<bio>.freeze, [">= 1.5.1"])
       s.add_runtime_dependency(%q<bio-samtools>.freeze, [">= 2.6.2"])
+      s.add_runtime_dependency(%q<descriptive_statistics>.freeze, [">= 0"])
       s.add_runtime_dependency(%q<systemu>.freeze, [">= 2.5.2"])
       s.add_development_dependency(%q<shoulda>.freeze, [">= 2.10"])
       s.add_development_dependency(%q<test-unit>.freeze, [">= 0"])
       s.add_development_dependency(%q<juwelier>.freeze, [">= 0"])
     else
       s.add_dependency(%q<bio>.freeze, [">= 1.5.1"])
       s.add_dependency(%q<bio-samtools>.freeze, [">= 2.6.2"])
+      s.add_dependency(%q<descriptive_statistics>.freeze, [">= 0"])
       s.add_dependency(%q<systemu>.freeze, [">= 2.5.2"])
       s.add_dependency(%q<shoulda>.freeze, [">= 2.10"])
       s.add_dependency(%q<test-unit>.freeze, [">= 0"])
       s.add_dependency(%q<juwelier>.freeze, [">= 0"])
     end
   else
     s.add_dependency(%q<bio>.freeze, [">= 1.5.1"])
     s.add_dependency(%q<bio-samtools>.freeze, [">= 2.6.2"])
+    s.add_dependency(%q<descriptive_statistics>.freeze, [">= 0"])
     s.add_dependency(%q<systemu>.freeze, [">= 2.5.2"])
     s.add_dependency(%q<shoulda>.freeze, [">= 2.10"])
     s.add_dependency(%q<test-unit>.freeze, [">= 0"])
     s.add_dependency(%q<juwelier>.freeze, [">= 0"])
   end