bio-polyploid-tools.gemspec in bio-polyploid-tools-0.5.2 vs bio-polyploid-tools.gemspec in bio-polyploid-tools-0.6.0

@@ -1,19 +1,19 @@
 # Generated by jeweler
 # DO NOT EDIT THIS FILE DIRECTLY
 # Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
 # -*- encoding: utf-8 -*-
-# stub: bio-polyploid-tools 0.5.2 ruby lib
+# stub: bio-polyploid-tools 0.6.0 ruby lib
 
 Gem::Specification.new do |s|
   s.name = "bio-polyploid-tools"
-  s.version = "0.5.2"
+  s.version = "0.6.0"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.require_paths = ["lib"]
   s.authors = ["Ricardo H.  Ramirez-Gonzalez"]
-  s.date = "2014-10-28"
+  s.date = "2015-02-15"
   s.description = "Repository of tools developed in TGAC and Crop Genetics in JIC to work with polyploid wheat"
   s.email = "[e-mail]"
   s.executables = ["bfr.rb", "count_variations.rb", "filter_blat_by_target_coverage.rb", "find_best_blat_hit.rb", "find_best_exonerate.rb", "hexaploid_primers.rb", "homokaryot_primers.rb", "map_markers_to_contigs.rb", "markers_in_region.rb", "polymarker.rb", "snp_position_to_polymarker.rb", "snps_between_bams.rb"]
   s.extra_rdoc_files = [
     "README",
@@ -79,20 +79,23 @@
     "lib/bio/PolyploidTools/ChromosomeArm.rb",
     "lib/bio/PolyploidTools/ExonContainer.rb",
     "lib/bio/PolyploidTools/Marker.rb",
     "lib/bio/PolyploidTools/PrimerRegion.rb",
     "lib/bio/PolyploidTools/SNP.rb",
+    "lib/bio/PolyploidTools/SNPMutant.rb",
     "lib/bio/PolyploidTools/SNPSequence.rb",
     "lib/bio/db/exonerate.rb",
     "lib/bio/db/primer3.rb",
     "lib/bioruby-polyploid-tools.rb",
     "test/data/BS00068396_51.fa",
     "test/data/BS00068396_51_contigs.aln",
     "test/data/BS00068396_51_contigs.dnd",
     "test/data/BS00068396_51_contigs.fa",
     "test/data/BS00068396_51_exonerate.tab",
     "test/data/BS00068396_51_genes.txt",
+    "test/data/IWGSC_CSS_1AL_scaff_1455974.fa",
+    "test/data/IWGSC_CSS_1AL_scaff_1455974_aln_contigs.fa",
     "test/data/LIB1716.bam",
     "test/data/LIB1716.bam.bai",
     "test/data/LIB1719.bam",
     "test/data/LIB1719.bam.bai",
     "test/data/LIB1721.bam",
@@ -109,9 +112,10 @@
     "test/data/Test3Aspecific_contigs.fa",
     "test/data/bfr_out_test.csv",
     "test/data/patological_cases5D.csv",
     "test/data/primer_3_input_header_test",
     "test/data/short_primer_design_test.csv",
+    "test/data/test_from_mutant.csv",
     "test/data/test_iselect.csv",
     "test/data/test_iselect_reference.fa",
     "test/data/test_iselect_reference.fa.fai",
     "test/data/test_primer3_error.csv",
     "test/data/test_primer3_error_contigs.fa",