bio-polyploid-tools.gemspec in bio-polyploid-tools-0.3.3 vs bio-polyploid-tools.gemspec in bio-polyploid-tools-0.4.0

@@ -1,22 +1,22 @@
 # Generated by jeweler
 # DO NOT EDIT THIS FILE DIRECTLY
 # Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
 # -*- encoding: utf-8 -*-
-# stub: bio-polyploid-tools 0.3.3 ruby lib
+# stub: bio-polyploid-tools 0.4.0 ruby lib
 
 Gem::Specification.new do |s|
   s.name = "bio-polyploid-tools"
-  s.version = "0.3.3"
+  s.version = "0.4.0"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.require_paths = ["lib"]
   s.authors = ["Ricardo H.  Ramirez-Gonzalez"]
-  s.date = "2014-05-30"
+  s.date = "2014-09-25"
   s.description = "Repository of tools developed in TGAC and Crop Genetics in JIC to work with polyploid wheat"
   s.email = "[e-mail]"
-  s.executables = ["bfr.rb", "count_variations.rb", "filter_blat_by_target_coverage.rb", "find_best_blat_hit.rb", "find_best_exonerate.rb", "hexaploid_primers.rb", "homokaryot_primers.rb", "map_markers_to_contigs.rb", "markers_in_region.rb", "polymarker.rb", "snps_between_bams.rb"]
+  s.executables = ["bfr.rb", "count_variations.rb", "filter_blat_by_target_coverage.rb", "find_best_blat_hit.rb", "find_best_exonerate.rb", "hexaploid_primers.rb", "homokaryot_primers.rb", "map_markers_to_contigs.rb", "markers_in_region.rb", "polymarker.rb", "snp_position_to_polymarker.rb", "snps_between_bams.rb"]
   s.extra_rdoc_files = [
     "README",
     "README.md"
   ]
   s.files = [
@@ -34,10 +34,11 @@
     "bin/hexaploid_primers.rb",
     "bin/homokaryot_primers.rb",
     "bin/map_markers_to_contigs.rb",
     "bin/markers_in_region.rb",
     "bin/polymarker.rb",
+    "bin/snp_position_to_polymarker.rb",
     "bin/snps_between_bams.rb",
     "bio-polyploid-tools.gemspec",
     "conf/defaults.rb",
     "conf/primer3_config/dangle.dh",
     "conf/primer3_config/dangle.ds",
@@ -96,22 +97,28 @@
     "test/data/LIB1719.bam.bai",
     "test/data/LIB1721.bam",
     "test/data/LIB1721.bam.bai",
     "test/data/LIB1722.bam",
     "test/data/LIB1722.bam.bai",
+    "test/data/PST130_7067.csv",
+    "test/data/PST130_7067.fa",
+    "test/data/PST130_7067.fa.fai",
+    "test/data/PST130_reverse_primer.csv",
     "test/data/S22380157.fa",
     "test/data/S22380157.fa.fai",
     "test/data/Test3Aspecific.csv",
     "test/data/Test3Aspecific_contigs.fa",
     "test/data/bfr_out_test.csv",
     "test/data/patological_cases5D.csv",
+    "test/data/primer_3_input_header_test",
     "test/data/short_primer_design_test.csv",
     "test/data/test_primer3_error.csv",
     "test/data/test_primer3_error_contigs.fa",
     "test/test_bfr.rb",
     "test/test_exon_container.rb",
     "test/test_exonearate.rb",
-    "test/test_snp_parsing.rb"
+    "test/test_snp_parsing.rb",
+    "test/test_wrong_selection.sh"
   ]
   s.homepage = "http://github.com/tgac/bioruby-polyploid-tools"
   s.licenses = ["MIT"]
   s.rubygems_version = "2.2.1"
   s.summary = "Tool to work with polyploids, NGS and molecular biology"