bio-polyploid-tools.gemspec in bio-polyploid-tools-0.10.1 vs bio-polyploid-tools.gemspec in bio-polyploid-tools-1.0.0

@@ -1,30 +1,28 @@
 # Generated by juwelier
 # DO NOT EDIT THIS FILE DIRECTLY
 # Instead, edit Juwelier::Tasks in Rakefile, and run 'rake gemspec'
 # -*- encoding: utf-8 -*-
-# stub: bio-polyploid-tools 0.10.1 ruby lib
+# stub: bio-polyploid-tools 1.0.0 ruby lib
 
 Gem::Specification.new do |s|
   s.name = "bio-polyploid-tools".freeze
-  s.version = "0.10.1"
+  s.version = "1.0.0"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0".freeze) if s.respond_to? :required_rubygems_version=
   s.require_paths = ["lib".freeze]
   s.authors = ["Ricardo H.  Ramirez-Gonzalez".freeze]
-  s.date = "2019-03-28"
+  s.date = "2019-07-05"
   s.description = "Repository of tools developed at Crop Genetics in JIC to work with polyploid wheat".freeze
   s.email = "[e-mail]".freeze
-  s.executables = ["bfr.rb".freeze, "blast_triads.rb".freeze, "blast_triads_promoters.rb".freeze, "count_variations.rb".freeze, "filter_blat_by_target_coverage.rb".freeze, "filter_exonerate_by_identity.rb".freeze, "find_best_blat_hit.rb".freeze, "find_best_exonerate.rb".freeze, "find_homoeologue_variations.rb".freeze, "get_longest_hsp_blastx_triads.rb".freeze, "hexaploid_primers.rb".freeze, "homokaryot_primers.rb".freeze, "mafft_triads.rb".freeze, "mafft_triads_promoters.rb".freeze, "map_markers_to_contigs.rb".freeze, "marker_to_vcf.rb".freeze, "markers_in_region.rb".freeze, "mask_triads.rb".freeze, "polymarker.rb".freeze, "polymarker_capillary.rb".freeze, "snp_position_to_polymarker.rb".freeze, "snps_between_bams.rb".freeze, "tag_stats.rb".freeze, "vcfLineToTable.rb".freeze, "vcfToPolyMarker.rb".freeze]
+  s.executables = ["bfr.rb".freeze, "blast_triads.rb".freeze, "blast_triads_promoters.rb".freeze, "count_variations.rb".freeze, "filter_blat_by_target_coverage.rb".freeze, "filter_exonerate_by_identity.rb".freeze, "find_best_blat_hit.rb".freeze, "find_best_exonerate.rb".freeze, "get_longest_hsp_blastx_triads.rb".freeze, "hexaploid_primers.rb".freeze, "homokaryot_primers.rb".freeze, "mafft_triads.rb".freeze, "mafft_triads_promoters.rb".freeze, "map_markers_to_contigs.rb".freeze, "marker_to_vcf.rb".freeze, "markers_in_region.rb".freeze, "mask_triads.rb".freeze, "polymarker.rb".freeze, "polymarker_capillary.rb".freeze, "polymarker_deletions.rb".freeze, "snp_position_to_polymarker.rb".freeze, "snps_between_bams.rb".freeze, "tag_stats.rb".freeze, "vcfLineToTable.rb".freeze, "vcfToPolyMarker.rb".freeze]
   s.extra_rdoc_files = [
-    "README",
     "README.md"
   ]
   s.files = [
     ".travis.yml",
     "Gemfile",
-    "README",
     "README.md",
     "Rakefile",
     "VERSION",
     "bin/bfr.rb",
     "bin/blast_triads.rb",
@@ -32,11 +30,10 @@
     "bin/count_variations.rb",
     "bin/filter_blat_by_target_coverage.rb",
     "bin/filter_exonerate_by_identity.rb",
     "bin/find_best_blat_hit.rb",
     "bin/find_best_exonerate.rb",
-    "bin/find_homoeologue_variations.rb",
     "bin/get_longest_hsp_blastx_triads.rb",
     "bin/hexaploid_primers.rb",
     "bin/homokaryot_primers.rb",
     "bin/mafft_triads.rb",
     "bin/mafft_triads_promoters.rb",
@@ -44,9 +41,10 @@
     "bin/marker_to_vcf.rb",
     "bin/markers_in_region.rb",
     "bin/mask_triads.rb",
     "bin/polymarker.rb",
     "bin/polymarker_capillary.rb",
+    "bin/polymarker_deletions.rb",
     "bin/snp_position_to_polymarker.rb",
     "bin/snps_between_bams.rb",
     "bin/tag_stats.rb",
     "bin/vcfLineToTable.rb",
     "bin/vcfToPolyMarker.rb",