bio-polyploid-tools.gemspec in bio-polyploid-tools-0.1.0 vs bio-polyploid-tools.gemspec in bio-polyploid-tools-0.2.3

@@ -1,35 +1,38 @@
 # Generated by jeweler
 # DO NOT EDIT THIS FILE DIRECTLY
 # Instead, edit Jeweler::Tasks in Rakefile, and run 'rake gemspec'
 # -*- encoding: utf-8 -*-
-# stub: bio-polyploid-tools 0.1.0 ruby lib
+# stub: bio-polyploid-tools 0.2.3 ruby lib
 
 Gem::Specification.new do |s|
   s.name = "bio-polyploid-tools"
-  s.version = "0.1.0"
+  s.version = "0.2.3"
 
   s.required_rubygems_version = Gem::Requirement.new(">= 0") if s.respond_to? :required_rubygems_version=
   s.require_paths = ["lib"]
   s.authors = ["Ricardo H.  Ramirez-Gonzalez"]
-  s.date = "2014-03-31"
+  s.date = "2014-04-27"
   s.description = "Repository of tools developed in TGAC and Crop Genetics in JIC to work with polyploid wheat"
   s.email = "[e-mail]"
-  s.executables = ["bfr.rb", "count_variations.rb", "filter_blat_by_target_coverage.rb", "find_best_blat_hit.rb", "hexaploid_primers.rb", "homokaryot_primers.rb", "map_markers_to_contigs.rb", "markers_in_region.rb", "polymarker.rb", "snps_between_bams.rb"]
+  s.executables = ["bfr.rb", "count_variations.rb", "filter_blat_by_target_coverage.rb", "find_best_blat_hit.rb", "find_best_exonerate.rb", "hexaploid_primers.rb", "homokaryot_primers.rb", "map_markers_to_contigs.rb", "markers_in_region.rb", "polymarker.rb", "snps_between_bams.rb"]
   s.extra_rdoc_files = [
-    "README"
+    "README",
+    "README.md"
   ]
   s.files = [
     "Gemfile",
     "Gemfile.lock",
     "README",
+    "README.md",
     "Rakefile",
     "VERSION",
     "bin/bfr.rb",
     "bin/count_variations.rb",
     "bin/filter_blat_by_target_coverage.rb",
     "bin/find_best_blat_hit.rb",
+    "bin/find_best_exonerate.rb",
     "bin/hexaploid_primers.rb",
     "bin/homokaryot_primers.rb",
     "bin/map_markers_to_contigs.rb",
     "bin/markers_in_region.rb",
     "bin/polymarker.rb",
@@ -76,13 +79,11 @@
     "lib/bio/PolyploidTools/ExonContainer.rb",
     "lib/bio/PolyploidTools/Marker.rb",
     "lib/bio/PolyploidTools/PrimerRegion.rb",
     "lib/bio/PolyploidTools/SNP.rb",
     "lib/bio/PolyploidTools/SNPSequence.rb",
-    "lib/bio/SAMToolsExtensions.rb",
     "lib/bio/db/exonerate.rb",
-    "lib/bio/db/fastadb.rb",
     "lib/bio/db/primer3.rb",
     "lib/bioruby-polyploid-tools.rb",
     "test/data/BS00068396_51.fa",
     "test/data/BS00068396_51_contigs.aln",
     "test/data/BS00068396_51_contigs.dnd",
@@ -117,23 +118,26 @@
 
   if s.respond_to? :specification_version then
     s.specification_version = 4
 
     if Gem::Version.new(Gem::VERSION) >= Gem::Version.new('1.2.0') then
-      s.add_runtime_dependency(%q<bio>, ["= 1.4.2"])
-      s.add_runtime_dependency(%q<bio-samtools>, ["= 0.6.2"])
+      s.add_runtime_dependency(%q<bio>, [">= 1.4.3"])
+      s.add_runtime_dependency(%q<bio-samtools>, [">= 2.0.3"])
       s.add_runtime_dependency(%q<rake>, [">= 0"])
       s.add_runtime_dependency(%q<jeweler>, [">= 0"])
+      s.add_runtime_dependency(%q<systemu>, [">= 2.5.2"])
     else
-      s.add_dependency(%q<bio>, ["= 1.4.2"])
-      s.add_dependency(%q<bio-samtools>, ["= 0.6.2"])
+      s.add_dependency(%q<bio>, [">= 1.4.3"])
+      s.add_dependency(%q<bio-samtools>, [">= 2.0.3"])
       s.add_dependency(%q<rake>, [">= 0"])
       s.add_dependency(%q<jeweler>, [">= 0"])
+      s.add_dependency(%q<systemu>, [">= 2.5.2"])
     end
   else
-    s.add_dependency(%q<bio>, ["= 1.4.2"])
-    s.add_dependency(%q<bio-samtools>, ["= 0.6.2"])
+    s.add_dependency(%q<bio>, [">= 1.4.3"])
+    s.add_dependency(%q<bio-samtools>, [">= 2.0.3"])
     s.add_dependency(%q<rake>, [">= 0"])
     s.add_dependency(%q<jeweler>, [">= 0"])
+    s.add_dependency(%q<systemu>, [">= 2.5.2"])
   end
 end