bin/polymarker.rb in bio-polyploid-tools-0.8.3 vs bin/polymarker.rb in bio-polyploid-tools-0.8.4
- old
+ new
@@ -348,13 +348,14 @@
:min_identity=>min_identity,
:filter_best=>options[:filter_best]})
#4.1 generating primer3 file
-write_status "Running primer3"
+write_status "Finding genome-specific positions"
file = File.open(exons_filename, "w")
container.print_fasta_snp_exones(file)
file.close
+write_status "Running primer3"
file = File.open(primer_3_input, "w")
Bio::DB::Primer3.prepare_input_file(file, options[:primer_3_preferences])
added_exons = container.print_primer_3_exons(file, nil, snp_in)