bin/polymarker.rb in bio-polyploid-tools-0.8.3 vs bin/polymarker.rb in bio-polyploid-tools-0.8.4

- old
+ new

@@ -348,13 +348,14 @@ :min_identity=>min_identity, :filter_best=>options[:filter_best]}) #4.1 generating primer3 file -write_status "Running primer3" +write_status "Finding genome-specific positions" file = File.open(exons_filename, "w") container.print_fasta_snp_exones(file) file.close +write_status "Running primer3" file = File.open(primer_3_input, "w") Bio::DB::Primer3.prepare_input_file(file, options[:primer_3_preferences]) added_exons = container.print_primer_3_exons(file, nil, snp_in)