bin/hexaploid_primers.rb in bio-polyploid-tools-0.7.3 vs bin/hexaploid_primers.rb in bio-polyploid-tools-0.8.0

- old
+ new

@@ -61,12 +61,12 @@ elsif ARGV.size == 2 #List and fasta file snp = Bio::PolyploidTools::SNP.parse(line) region = fasta_reference_db.index.region_for_entry(snp.gene).get_full_region snp.template_sequence = fasta_reference_db.fetch_sequence(region) else - rise Bio::DB::Exonerate::ExonerateException.new "Wrong number of arguments. " + raise Bio::DB::Exonerate::ExonerateException.new "Wrong number of arguments. " end - rise Bio::DB::Exonerate::ExonerateException.new "No SNP for line '#{line}'" if snp == nil + raise Bio::DB::Exonerate::ExonerateException.new "No SNP for line '#{line}'" if snp == nil snp.snp_in = snp_in snp.original_name = original_name snps << snp chromosome = snp.chromosome unless chromosome raise Bio::DB::Exonerate::ExonerateException.new "All the snps should come from the same chromosome" if chromosome != snp.chromosome