lib/kingdom_db.rb in bio-phyta-0.9.0 vs lib/kingdom_db.rb in bio-phyta-0.9.1

@@ -2,10 +2,16 @@
 
 class KingdomDB
 
   ROOT_ID = "1"
   SCIENTIFIC_NAME = "scientific name"
+  DEFAULT_FILTER = [
+                                          "Bacteria",
+                                          "Archaea",
+                                          "Viruses",
+                                          "NONE"
+                                         ]
 
   def initialize(server, user, password, database)
     
     connect_string = 'mysql://'+ server + '/' + database + '?user=' + user
 
@@ -24,10 +30,10 @@
     
     @database = Sequel.connect(connect_string)
     @filter_hit_cache = {}
     
   end
-  
+    
   def id_from_name(taxon_name)
     db_results = @database[:names].select(:taxonid, :class).filter(:name => taxon_name).all
 
     if db_results.size > 1
       #If we get more than one result, check if we got a scientific name