lib/bio/db/gff/gffparser.rb in bio-gff3-0.8.0 vs lib/bio/db/gff/gffparser.rb in bio-gff3-0.8.2

@@ -105,11 +105,11 @@
               sequence = @sequencelist[component.seqname]
               # p sequence
               if sequence
                 yield description(id,component,reclist), assemble(sequence,component.start,reclist)
               else 
-                warn "No sequence information for",id
+                error "No sequence information for",id
               end
             end
           end
         end
 
@@ -126,11 +126,11 @@
                   # raise "CDS size #{seq.size} is not a multiple of 3! <#{seq}>"
                   warn "CDS size is not a multiple of 3",id
                 end
                 yield description(id,component,reclist), seq
               else 
-                warn "No sequence information for",id
+                error "No sequence information for",id
               end
             end
           end
         end
 
@@ -141,10 +141,10 @@
               sequence = @sequencelist[component.seqname]
               if sequence
                 seq = assemble(sequence,component.start,reclist)
                 yield description(id,component,reclist), seq
               else 
-                warn "No sequence information for",id
+                error "No sequence information for",id
               end
             end
           end
         end
       end