exe/big_simon in big_simon-0.2.0 vs exe/big_simon in big_simon-0.2.1

- old
+ new

@@ -71,11 +71,13 @@ # all_predictions_fname = File.join outdir, "scores_all.txt" mean_scaled_scores_fname = File.join outdir, "scores_scaled.mean.txt" -name_map_virus, all_ids_virus = BigSimon::Utils.set_up_tmp_dirs virus_fnames, tmpdir_virus, "virus" -name_map_host, all_ids_host = BigSimon::Utils.set_up_tmp_dirs host_fnames, tmpdir_host, "host" +name_map_virus, all_ids_virus, vir_seq_lengths = BigSimon::Utils.set_up_tmp_dirs virus_fnames, tmpdir_virus, "virus" +name_map_host, all_ids_host, host_seq_lengths = BigSimon::Utils.set_up_tmp_dirs host_fnames, tmpdir_host, "host" + +all_seq_lengths = vir_seq_lengths.merge host_seq_lengths wish_outf = BigSimon::Runners.wish BigSimon::WISH, tmpdir_virus, tmpdir_host, tmpdir, threads vhm_outf = BigSimon::Runners.vir_host_matcher BigSimon::VHM, tmpdir_virus, tmpdir_host, tmpdir # TODO separate the parser from the runner for mummer.