lib/WingenderTFClass/motif_family_recognizer.rb in WingenderTFClass-0.1.0 vs lib/WingenderTFClass/motif_family_recognizer.rb in WingenderTFClass-0.1.1

@@ -1,17 +1,9 @@
+require_relative 'local_paths'
 require_relative 'obo/tf_classification'
 require_relative 'uniprot_info'
 
 module WingenderTFClass
-  module FilePaths
-    TFOntologyHuman = File.absolute_path('source_data/TFOntologies/TFClass_human.obo', __dir__)
-    TFOntologyMouse = File.absolute_path('source_data/TFOntologies/TFClass_mouse.obo', __dir__)
-
-    UniprotHuman = File.absolute_path('source_data/uniprot_infos/human.tsv', __dir__)
-    UniprotMouse = File.absolute_path('source_data/uniprot_infos/mouse.tsv', __dir__)
-  end
-
-
   module ProteinFamilyRecognizers
     def self.by_uniprot_id(deepness:, tf_classification_filename:, uniprot_infos_filename:)
       tf_classification = OBO::TFClassification.from_file(tf_classification_filename)
       ByUniprotID.new(
         ByUniprotAC.new(tf_classification, deepness),