Contents

module SequenceServer
  # Sample hit link customization file.
  module Links
    SI_UNIPROT_IDPAT = /SI2.2.0.(\d*)/
    SI_UNIPROT_IDMAP = YAML.load_file(File.expand_path('si_uniprot_idmap.yml',
                                                       File.dirname(__FILE__)))

    def uniprot
      return unless accession.match(SI_UNIPROT_IDPAT)
      uniprot_id  = SI_UNIPROT_IDMAP["SINV_#{Regexp.last_match[1]}"]
      return unless uniprot_id

      uniprot_id = encode uniprot_id
      url = "http://www.uniprot.org/uniprot/#{uniprot_id}"
      {
        :order => 2,
        :title => 'UniProt',
        :url   => url,
        :icon  => 'fa-external-link'
      }
    end
  end
end

Version data entries

15 entries across 15 versions & 1 rubygems

Version	Path
sequenceserver-1.0.14	spec/database/sample/links.rb
sequenceserver-1.0.13	spec/database/sample/links.rb
sequenceserver-1.0.12	spec/database/sample/links.rb
sequenceserver-1.0.11	spec/database/sample/links.rb
sequenceserver-1.0.10	spec/database/sample/links.rb
sequenceserver-1.0.9	spec/database/sample/links.rb
sequenceserver-1.0.8	spec/database/sample/links.rb
sequenceserver-1.0.7	spec/database/sample/links.rb
sequenceserver-1.0.6	spec/database/sample/links.rb
sequenceserver-1.0.5	spec/database/sample/links.rb
sequenceserver-1.0.4	spec/database/sample/links.rb
sequenceserver-1.0.3	spec/database/sample/links.rb
sequenceserver-1.0.2	spec/database/sample/links.rb
sequenceserver-1.0.1	spec/database/sample/links.rb
sequenceserver-1.0.0	spec/database/sample/links.rb