Sha256: fe14d13a6151698da9859081024d65205657a333238ef95dc5d9147f6677cde1
Contents?: true
Size: 1.08 KB
Versions: 9
Compression:
Stored size: 1.08 KB
Contents
# ====================================== # General parameters SANGER # ====================================== # Help: <br/>This template is used to preprocess Sanger genomic data <br/> # Help: <br/><b>Plugin list and aplication order:</b><br/> # Help: <ul> # Help: <li>PluginIndeterminations: retaining the longest sequence fragment without indeterminations (N)</li> # Help: <li>PluginAdapters: trimming adapters</li> # Help: <li>PluginUserContaminants: discarding sequences matching any entry in the user contaminant database saving them in a separate file</li> # Help: <li>PluginContaminants: trimming the contaminant fragments found in the contaminant database. When contamination is prevalent, sequences are rejected. </li> # Help: <li>PluginVectors: trimming any cloning vector found in SeqTrimNEXT database. </li> # Help: <li>PluginLowQuality: trimming low quality regions from sequences. </li> # Help: </ul> plugin_list = PluginIndeterminations,PluginSangerAdapters,PluginFindPolyAt,PluginContaminants,PluginVectors,PluginLowQuality # do not remove cloned sequences remove_clonality=false
Version data entries
9 entries across 9 versions & 1 rubygems