Sha256: f89446039c708f35a05033e86312964cba90833bafb6d6065ac3227941b2eaaa
Contents?: true
Size: 1.78 KB
Versions: 112
Compression:
Stored size: 1.78 KB
Contents
module BELParser
module Language
# CovalentProteinModification defines a controlled vocabulary of
# post-translational protein modifications.
#
# see https://en.wikipedia.org/wiki/Post-translational_modification
module CovalentProteinModification
Acetylation = [:Acetylation, :A].freeze
Farnesylation = [:Farnesylation, :F].freeze
Glycosylation = [:Glycosylation, :G].freeze
Hydroxylation = [:Hydroxylation, :H].freeze
Methylation = [:Methylation, :M].freeze
Phosphorylation = [:Phosphorylation, :P].freeze
Ribosylation = [:Ribosylation, :R].freeze
Sumoylation = [:Sumoylation, :S].freeze
Ubiquitination = [:Ubiquitination, :U].freeze
# Determines if +sym+ represents a covalent protein modification.
#
# @param [#to_sym] sym covalent protein modification code
# @return [Boolean] +true+ if +sym+ code is included in supported
# covalent protein modifications; +false+ if not supported
def self.includes?(sym)
@hash.key?(sym.to_sym)
end
# Gets all supported covalent protein modification.
def self.names
@names
end
# Gets all supported covalent protein modification (i.e. name, 1-Letter).
def self.values
@values
end
unless defined? @hash
@hash = {}
constants.map(&method(:const_get)).each do |values|
@hash.update(
Hash[values.map { |v| [v, values.first] }]
)
end
@hash.freeze
end
unless defined? @names
@names = constants.map(&method(:const_get)).map(&:first).sort.freeze
end
unless defined? @values
@values = constants.map(&method(:const_get)).map(&:to_a).flatten.freeze
end
end
end
end
Version data entries
112 entries across 112 versions & 1 rubygems