Sha256: f8404da4e8d25469434b2de537e4cf039ee4673fb5eac09e5d358b119316d9fb
Contents?: true
Size: 587 Bytes
Versions: 20
Compression:
Stored size: 587 Bytes
Contents
module Bio
class Gadget < Thor
namespace :bio
desc 'wigchr WIG CHR', 'extract wiggle track on specified chromosome'
def wigchr(wigfile, chr)
target = false
myopen(wigfile) { |fp|
fp.each { |line|
if (/^(fixed|variable)Step/ =~ line)
if (/chrom=#{chr}\s/ =~ line)
target = true
puts line
else
target = false
end
elsif (/^\d/ =~ line)
puts line if target
else
puts line
end
}
}
end
end
end
Version data entries
20 entries across 20 versions & 1 rubygems