--- !ruby/object:Gem::Specification
name: full_lengther_next
version: !ruby/object:Gem::Version
  version: 0.6.1
  prerelease: 
platform: ruby
authors:
- ! 'Pedro Seoane & Noe Fernandez & Dario Guerrero '
autorequire: 
bindir: bin
cert_chain: []
date: 2016-05-03 00:00:00.000000000 Z
dependencies:
- !ruby/object:Gem::Dependency
  name: xml-simple
  requirement: !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ! '>='
      - !ruby/object:Gem::Version
        version: 1.0.12
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ! '>='
      - !ruby/object:Gem::Version
        version: 1.0.12
- !ruby/object:Gem::Dependency
  name: scbi_blast
  requirement: !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ! '>='
      - !ruby/object:Gem::Version
        version: 0.0.32
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ! '>='
      - !ruby/object:Gem::Version
        version: 0.0.32
- !ruby/object:Gem::Dependency
  name: scbi_mapreduce
  requirement: !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ! '>='
      - !ruby/object:Gem::Version
        version: 0.0.29
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ! '>='
      - !ruby/object:Gem::Version
        version: 0.0.29
- !ruby/object:Gem::Dependency
  name: scbi_zcat
  requirement: !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ! '>='
      - !ruby/object:Gem::Version
        version: '0'
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ! '>='
      - !ruby/object:Gem::Version
        version: '0'
- !ruby/object:Gem::Dependency
  name: bio-cd-hit-report
  requirement: !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ! '>='
      - !ruby/object:Gem::Version
        version: 0.1.0
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ! '>='
      - !ruby/object:Gem::Version
        version: 0.1.0
- !ruby/object:Gem::Dependency
  name: bio
  requirement: !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ! '>='
      - !ruby/object:Gem::Version
        version: 1.4.3
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ! '>='
      - !ruby/object:Gem::Version
        version: 1.4.3
- !ruby/object:Gem::Dependency
  name: scbi_plot
  requirement: !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ! '>='
      - !ruby/object:Gem::Version
        version: 0.0.6
  type: :runtime
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ! '>='
      - !ruby/object:Gem::Version
        version: 0.0.6
- !ruby/object:Gem::Dependency
  name: rdoc
  requirement: !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ~>
      - !ruby/object:Gem::Version
        version: '3.10'
  type: :development
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ~>
      - !ruby/object:Gem::Version
        version: '3.10'
- !ruby/object:Gem::Dependency
  name: newgem
  requirement: !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ! '>='
      - !ruby/object:Gem::Version
        version: 1.5.3
  type: :development
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ! '>='
      - !ruby/object:Gem::Version
        version: 1.5.3
- !ruby/object:Gem::Dependency
  name: hoe
  requirement: !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ~>
      - !ruby/object:Gem::Version
        version: '3.3'
  type: :development
  prerelease: false
  version_requirements: !ruby/object:Gem::Requirement
    none: false
    requirements:
    - - ~>
      - !ruby/object:Gem::Version
        version: '3.3'
description: FULL-LENGTHERNEXT is a tool adapted to NGS technologies, able to work
  in parallel and in a distributed way to minimise computing time. It is able to classify
  unigenes to full-length, 5’-end, 3’-end and internal, suggesting which unknown genes
  are coding or not. It will be also shown that FULL-LENGTHERNEXT fixes frame shifts,
  one of the main mistake found in wrong entries of full-length sequences databases,
  and it is a fast tool to compare different transcriptome assemblies.
email:
- seoanezonjic@hotmail.com & noeisneo@gmail.com & dariogf@gmail.com
executables:
- plot_taxonomy.rb
- plot_fln.rb
- download_fln_dbs.rb
- full_lengther_next
- make_user_db.rb
- make_test_dataset.rb
extensions: []
extra_rdoc_files:
- PostInstall.txt
- README.rdoc
- History.txt
- Manifest.txt
files:
- Rakefile
- script/generate
- script/destroy
- script/console
- test/test_full_lengther_next.rb
- test/test_helper.rb
- bin/plot_taxonomy.rb
- bin/plot_fln.rb
- bin/download_fln_dbs.rb
- bin/full_lengther_next
- bin/make_user_db.rb
- bin/make_test_dataset.rb
- PostInstall.txt
- README.rdoc
- History.txt
- Manifest.txt
- lib/full_lengther_next/classes/blast_functions.rb
- lib/full_lengther_next/classes/my_worker_manager_fln.rb
- lib/full_lengther_next/classes/types.rb
- lib/full_lengther_next/classes/chimeric_seqs.rb
- lib/full_lengther_next/classes/artifacts.rb
- lib/full_lengther_next/classes/cdhit.rb
- lib/full_lengther_next/classes/fl_analysis.rb
- lib/full_lengther_next/classes/fl_string_utils.rb
- lib/full_lengther_next/classes/my_worker.rb
- lib/full_lengther_next/classes/sequence.rb
- lib/full_lengther_next/classes/my_worker_EST.rb
- lib/full_lengther_next/classes/test_code.rb
- lib/full_lengther_next/classes/orf.rb
- lib/full_lengther_next/classes/une_los_hit.rb
- lib/full_lengther_next/classes/warnings.rb
- lib/full_lengther_next/classes/fln_stats.rb
- lib/full_lengther_next/classes/my_worker_manager_EST.rb
- lib/full_lengther_next/classes/nc_rna.rb
- lib/full_lengther_next/classes/reptrans.rb
- lib/full_lengther_next/classes/common_functions.rb
- lib/full_lengther_next/classes/exonerate_result.rb
- lib/full_lengther_next/classes/handle_db.rb
- lib/full_lengther_next.rb
- lib/expresscanvas.zip
- .gemtest
homepage: http://www.scbi.uma.es/downloads
licenses: []
post_install_message: PostInstall.txt
rdoc_options:
- --main
- README.rdoc
require_paths:
- lib
required_ruby_version: !ruby/object:Gem::Requirement
  none: false
  requirements:
  - - ! '>='
    - !ruby/object:Gem::Version
      version: '0'
required_rubygems_version: !ruby/object:Gem::Requirement
  none: false
  requirements:
  - - ! '>='
    - !ruby/object:Gem::Version
      version: '0'
requirements: []
rubyforge_project: full_lengther_next
rubygems_version: 1.8.23
signing_key: 
specification_version: 3
summary: FULL-LENGTHERNEXT is a tool adapted to NGS technologies, able to work in
  parallel and in a distributed way to minimise computing time
test_files:
- test/test_full_lengther_next.rb
- test/test_helper.rb