Sha256: f17c4cc876bcbd3943ffc9b4fee98b117cd7fecfc3df283c785ced1cc25587a1
Contents?: true
Size: 716 Bytes
Versions: 10
Compression:
Stored size: 716 Bytes
Contents
require File.join(File.dirname(__FILE__),'../lib/rake_helper')
require 'rbbt/sources/organism'
BIOGRID_URL = "http://thebiogrid.org/downloads/archives/Release%20Archive/BIOGRID-3.1.77/BIOGRID-ORGANISM-3.1.77.tab2.zip"
file 'source' do |t|
FileUtils.mkdir_p t.name
Misc.in_dir(t.name) do
CMD::cmd("wget '#{BIOGRID_URL}' -O biogrid.zip")
CMD::cmd('unzip biogrid.zip')
end
end
rule /(\w+)\/protein_protein/ => 'source' do |t|
org = t.name.match(/(\w+)\/protein_protein/)[1]
FileUtils.mkdir_p File.dirname(t.name)
name = Organism.name(org)
source_file = Dir.glob(File.join(t.prerequisites.first, '*')).select{|file| file =~ /#{name.sub(' ', '_')}/}.first
FileUtils.cp source_file, t.name
end
Version data entries
10 entries across 10 versions & 1 rubygems