--- !ruby/object:Gem::Specification
name: bioinform
version: !ruby/object:Gem::Version
  version: 0.3.1
platform: ruby
authors:
- Ilya Vorontsov
autorequire: 
bindir: bin
cert_chain: []
date: 2016-04-22 00:00:00.000000000 Z
dependencies: []
description: A bunch of useful classes for bioinformatics
email:
- prijutme4ty@gmail.com
executables:
- convert_motif
- pcm2pwm
- split_motifs
extensions: []
extra_rdoc_files: []
files:
- ".gitignore"
- Gemfile
- Gemfile.lock
- Guardfile
- LICENSE
- README.md
- Rakefile
- TODO.txt
- bin/convert_motif
- bin/pcm2pwm
- bin/split_motifs
- bioinform.gemspec
- lib/bioinform.rb
- lib/bioinform/alphabet.rb
- lib/bioinform/background.rb
- lib/bioinform/cli.rb
- lib/bioinform/cli/convert_motif.rb
- lib/bioinform/cli/pcm2pwm.rb
- lib/bioinform/cli/split_motifs.rb
- lib/bioinform/conversion_algorithms.rb
- lib/bioinform/conversion_algorithms/pcm2ppm_converter.rb
- lib/bioinform/conversion_algorithms/pcm2pwm_converter.rb
- lib/bioinform/conversion_algorithms/pcm2pwm_mara_converter.rb
- lib/bioinform/conversion_algorithms/ppm2pcm_converter.rb
- lib/bioinform/conversion_algorithms/pwm2iupac_pwm_converter.rb
- lib/bioinform/conversion_algorithms/pwm2pcm_converter.rb
- lib/bioinform/data_models.rb
- lib/bioinform/data_models/named_model.rb
- lib/bioinform/data_models/pcm.rb
- lib/bioinform/data_models/pm.rb
- lib/bioinform/data_models/ppm.rb
- lib/bioinform/data_models/pwm.rb
- lib/bioinform/errors.rb
- lib/bioinform/formatters.rb
- lib/bioinform/formatters/consensus_formatter.rb
- lib/bioinform/formatters/motif_formatter.rb
- lib/bioinform/formatters/pretty_matrix_formatter.rb
- lib/bioinform/formatters/transfac_formatter.rb
- lib/bioinform/parsers.rb
- lib/bioinform/parsers/matrix_parser.rb
- lib/bioinform/parsers/motif_splitter.rb
- lib/bioinform/support.rb
- lib/bioinform/support/strip_doc.rb
- lib/bioinform/validator.rb
- lib/bioinform/version.rb
- spec/alphabet_spec.rb
- spec/background_spec.rb
- spec/cli/cli_spec.rb
- spec/cli/convert_motif_spec.rb
- spec/cli/data/pcm2pwm/KLF4 f2 spaced name.pcm
- spec/cli/data/pcm2pwm/KLF4_f2.pcm
- spec/cli/data/pcm2pwm/KLF4_f2.pwm.result
- spec/cli/data/pcm2pwm/SP1_f1.pcm
- spec/cli/data/pcm2pwm/SP1_f1.pwm.result
- spec/cli/data/split_motifs/GABPA_f1.mat.result
- spec/cli/data/split_motifs/KLF4_f2.mat.result
- spec/cli/data/split_motifs/SP1_f1.mat.result
- spec/cli/data/split_motifs/plain_collection.txt
- spec/cli/pcm2pwm_spec.rb
- spec/cli/shared_examples/convert_motif/motif_list_empty.rb
- spec/cli/shared_examples/convert_motif/several_motifs_specified.rb
- spec/cli/shared_examples/convert_motif/single_motif_specified.rb
- spec/cli/shared_examples/convert_motif/yield_help_string.rb
- spec/cli/shared_examples/convert_motif/yield_motif_conversion_error.rb
- spec/cli/split_motifs_spec.rb
- spec/converters/pcm2ppm_converter_spec.rb
- spec/converters/pcm2pwm_converter_spec.rb
- spec/converters/ppm2pcm_converter_spec.rb
- spec/converters/pwm2iupac_pwm_converter_spec.rb
- spec/converters/pwm2pcm_converter_spec.rb
- spec/data_models/named_model_spec.rb
- spec/data_models/pcm_spec.rb
- spec/data_models/pm_spec.rb
- spec/data_models/ppm_spec.rb
- spec/data_models/pwm_spec.rb
- spec/fabricators/motif_formats_fabricator.rb
- spec/formatters/consensus_formatter_spec.rb
- spec/formatters/raw_formatter_spec.rb
- spec/parsers/matrix_parser_spec.rb
- spec/parsers/motif_splitter_spec.rb
- spec/spec_helper.rb
- spec/spec_helper_source.rb
- spec/support_spec.rb
homepage: ''
licenses: []
metadata: {}
post_install_message: 
rdoc_options: []
require_paths:
- lib
required_ruby_version: !ruby/object:Gem::Requirement
  requirements:
  - - ">="
    - !ruby/object:Gem::Version
      version: '0'
required_rubygems_version: !ruby/object:Gem::Requirement
  requirements:
  - - ">="
    - !ruby/object:Gem::Version
      version: '0'
requirements: []
rubyforge_project: 
rubygems_version: 2.5.1
signing_key: 
specification_version: 4
summary: Classes for work with different input formats of positional matrices and
  IUPAC-words and making simple transform and statistics with them. Also module includes
  several useful extensions for Enumerable module like parametric map and callable
  symbols
test_files:
- spec/alphabet_spec.rb
- spec/background_spec.rb
- spec/cli/cli_spec.rb
- spec/cli/convert_motif_spec.rb
- spec/cli/data/pcm2pwm/KLF4 f2 spaced name.pcm
- spec/cli/data/pcm2pwm/KLF4_f2.pcm
- spec/cli/data/pcm2pwm/KLF4_f2.pwm.result
- spec/cli/data/pcm2pwm/SP1_f1.pcm
- spec/cli/data/pcm2pwm/SP1_f1.pwm.result
- spec/cli/data/split_motifs/GABPA_f1.mat.result
- spec/cli/data/split_motifs/KLF4_f2.mat.result
- spec/cli/data/split_motifs/SP1_f1.mat.result
- spec/cli/data/split_motifs/plain_collection.txt
- spec/cli/pcm2pwm_spec.rb
- spec/cli/shared_examples/convert_motif/motif_list_empty.rb
- spec/cli/shared_examples/convert_motif/several_motifs_specified.rb
- spec/cli/shared_examples/convert_motif/single_motif_specified.rb
- spec/cli/shared_examples/convert_motif/yield_help_string.rb
- spec/cli/shared_examples/convert_motif/yield_motif_conversion_error.rb
- spec/cli/split_motifs_spec.rb
- spec/converters/pcm2ppm_converter_spec.rb
- spec/converters/pcm2pwm_converter_spec.rb
- spec/converters/ppm2pcm_converter_spec.rb
- spec/converters/pwm2iupac_pwm_converter_spec.rb
- spec/converters/pwm2pcm_converter_spec.rb
- spec/data_models/named_model_spec.rb
- spec/data_models/pcm_spec.rb
- spec/data_models/pm_spec.rb
- spec/data_models/ppm_spec.rb
- spec/data_models/pwm_spec.rb
- spec/fabricators/motif_formats_fabricator.rb
- spec/formatters/consensus_formatter_spec.rb
- spec/formatters/raw_formatter_spec.rb
- spec/parsers/matrix_parser_spec.rb
- spec/parsers/motif_splitter_spec.rb
- spec/spec_helper.rb
- spec/spec_helper_source.rb
- spec/support_spec.rb