# encoding: utf-8 # The following are the YSupport components used by YPetri: require 'y_support/local_object' # object aware of its creation scope require 'y_support/respond_to' # Symbol#~@ + RespondTo#=== require 'y_support/name_magic' # naming by assignment & more require 'y_support/unicode' # รง means self.class require 'y_support/typing' # run-time assertions require 'y_support/try' # increased awareness in danger require 'y_support/core_ext' # core extensions require 'y_support/stdlib_ext/matrix' # matrix extensions require 'y_support/abstract_algebra' # require 'y_support/kde' # popup file with kioclient # ActiveSupport components: require 'active_support/core_ext/module/delegation' require 'active_support/core_ext/array/extract_options' require 'active_support/inflector' # The following are the Ruby libraries used by YPetri: require 'gnuplot' # used for graph visualization require 'csv' # not used at the moment require 'graphviz' # used for Petri net visualization require 'pp' # usef for pretty require 'distribution' # used in the simulation core require_relative 'y_petri/version' require_relative 'y_petri/fixed_assets' require_relative 'y_petri/world' require_relative 'y_petri/place' require_relative 'y_petri/transition' require_relative 'y_petri/net' require_relative 'y_petri/simulation' require_relative 'y_petri/core' require_relative 'y_petri/agent' require_relative 'y_petri/dsl' # YPetri represents Petri net (PN) formalims. # # A PN consists of places and transitions. There are also arcs, "arrows" # connecting places and transitions, but these are not considered first class # citizens in YPetri. # # During PN execution (simulation), transitions act upon places and change their # marking by adding / removing tokens as dictated by their function -- more # precisely, their operation prescription. Borrowing more from the functional # terminology, I define domain an codomain of a PN transition in a similar way # to the functional domain and codomain. # # Hybrid Functional Petri Net (HFPN) formalism, motivated by the needs of # modeling of cellular processes, explicitly introduces the option of having # discrete as well as continuous places and transitions (therefrom "hybrid"). # In YPetri, the emphasis is elsewhere. Just like in modern computer languages, # there is a fluid transition between Fixnum and Bignum, YPetri attempts for # similarly fluid transition between Integer (ie. discrete) and floating point # (ie. continuous) representation of token amounts and reaction speeds. Whole # discrete / continuous issue thus becomes the business of the simulator, not # the model. # module YPetri class << self def included( receiver ) receiver.extend YPetri::DSL receiver.delegate :y_petri_agent, to: "self.class" end end end